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- PDB-5zld: SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX CGC... -
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Basic information
Entry | Database: PDB / ID: 5zld | ||||||||||||||||||||
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Title | SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX CGCGAAATTTCGCG | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA | Function / homology | DNA / DNA (> 10) | ![]() Biological species | ![]() Method | SOLUTION NMR / torsion angle dynamics | ![]() Ganguly, S. / Basu, G. | ![]() ![]() Title: DNA Minor Groove-Induced cis - trans Isomerization of a Near-Infrared Fluorescent Probe. Authors: Ganguly, S. / Murugan, N.A. / Ghosh, D. / Narayanaswamy, N. / Govindaraju, T. / Basu, G. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 87.4 KB | Display | ![]() |
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PDB format | ![]() | 59.9 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 398.1 KB | Display | ![]() |
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Full document | ![]() | 631.5 KB | Display | |
Data in XML | ![]() | 38.7 KB | Display | |
Data in CIF | ![]() | 36.2 KB | Display | |
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-Related structure data
Related structure data | ![]() 6ijvC ![]() 6ijwC C: citing same article ( |
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Similar structure data | |
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 4280.792 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 700 MHz Details: Avance III HD NMR spectrophotometer equipped with cryoprobe |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 4 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 20 / Conformers submitted total number: 4 |