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- PDB-5xm0: The mouse nucleosome structure containing H2A, H2B type3-A, H3.3,... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5xm0 | ||||||||||||
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Title | The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 | ||||||||||||
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![]() | STRUCTURAL PROTEIN/DNA / nucleosome / chromatin / DNA-Protein complex / STRUCTURAL PROTEIN-DNA complex | ||||||||||||
Function / homology | ![]() Inhibition of DNA recombination at telomere / Deposition of new CENPA-containing nucleosomes at the centromere / SUMOylation of chromatin organization proteins / DNA Damage/Telomere Stress Induced Senescence / G2/M DNA damage checkpoint / Recognition and association of DNA glycosylase with site containing an affected purine / HDMs demethylate histones / Cleavage of the damaged purine / Nonhomologous End-Joining (NHEJ) / Condensation of Prophase Chromosomes ...Inhibition of DNA recombination at telomere / Deposition of new CENPA-containing nucleosomes at the centromere / SUMOylation of chromatin organization proteins / DNA Damage/Telomere Stress Induced Senescence / G2/M DNA damage checkpoint / Recognition and association of DNA glycosylase with site containing an affected purine / HDMs demethylate histones / Cleavage of the damaged purine / Nonhomologous End-Joining (NHEJ) / Condensation of Prophase Chromosomes / Metalloprotease DUBs / HDACs deacetylate histones / PRC2 methylates histones and DNA / Processing of DNA double-strand break ends / UCH proteinases / HATs acetylate histones / PKMTs methylate histone lysines / Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks / RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function / RMTs methylate histone arginines / negative regulation of chromosome condensation / Barr body / regulation of centromere complex assembly / Factors involved in megakaryocyte development and platelet production / Estrogen-dependent gene expression / muscle cell differentiation / pericentric heterochromatin formation / inner kinetochore / Ub-specific processing proteases / oocyte maturation / oogenesis / nucleus organization / chromosome, centromeric region / spermatid development / subtelomeric heterochromatin formation / single fertilization / RNA polymerase II core promoter sequence-specific DNA binding / protein localization to CENP-A containing chromatin / CENP-A containing nucleosome / heterochromatin organization / nucleosomal DNA binding / embryo implantation / multicellular organism growth / osteoblast differentiation / structural constituent of chromatin / male gonad development / nucleosome / nucleosome assembly / chromatin organization / chromosome / positive regulation of cell growth / spermatogenesis / cell population proliferation / chromosome, telomeric region / protein heterodimerization activity / RNA polymerase II cis-regulatory region sequence-specific DNA binding / chromatin / DNA binding / nucleoplasm / nucleus Similarity search - Function | ||||||||||||
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Method | ![]() ![]() ![]() | ||||||||||||
![]() | Taguchi, H. / Horikoshi, N. / Kurumizaka, H. | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Authors: Harada, A. / Maehara, K. / Ono, Y. / Taguchi, H. / Yoshioka, K. / Kitajima, Y. / Xie, Y. / Sato, Y. / Iwasaki, T. / Nogami, J. / Okada, S. / Komatsu, T. / Semba, Y. / Takemoto, T. / Kimura, ...Authors: Harada, A. / Maehara, K. / Ono, Y. / Taguchi, H. / Yoshioka, K. / Kitajima, Y. / Xie, Y. / Sato, Y. / Iwasaki, T. / Nogami, J. / Okada, S. / Komatsu, T. / Semba, Y. / Takemoto, T. / Kimura, H. / Kurumizaka, H. / Ohkawa, Y. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 319.5 KB | Display | ![]() |
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PDB format | ![]() | 242 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 502.3 KB | Display | ![]() |
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Full document | ![]() | 522.2 KB | Display | |
Data in XML | ![]() | 35 KB | Display | |
Data in CIF | ![]() | 50.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5xm1C ![]() 3av2S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Assembly
Deposited unit | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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