Entry | Database: PDB / ID: 5wyh |
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Title | Crystal structure of RidL(1-200) complexed with VPS29 |
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Components | - Interaptin
- Vacuolar protein sorting-associated protein 29
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Keywords | METAL BINDING PROTEIN/PROTEIN BINDING / Complex VPS29 RidL / METAL BINDING PROTEIN-PROTEIN BINDING complex |
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Function / homology | Function and homology information
retromer, cargo-selective complex / WNT ligand biogenesis and trafficking / retromer complex / endocytic recycling / retrograde transport, endosome to Golgi / intracellular protein transport / late endosome / early endosome / endosome membrane / endosome ...retromer, cargo-selective complex / WNT ligand biogenesis and trafficking / retromer complex / endocytic recycling / retrograde transport, endosome to Golgi / intracellular protein transport / late endosome / early endosome / endosome membrane / endosome / intracellular membrane-bounded organelle / metal ion binding / cytosolSimilarity search - Function Vacuolar protein sorting-associated protein 29 / Phosphodiesterase MJ0936/Vps29 / Calcineurin-like phosphoesterase domain, lpxH-type / Calcineurin-like phosphoesterase superfamily domain / Metallo-dependent phosphatases / Purple Acid Phosphatase; chain A, domain 2 / Metallo-dependent phosphatase-like / 4-Layer Sandwich / Alpha BetaSimilarity search - Domain/homology |
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Biological species | Homo sapiens (human)
Legionella pneumophila subsp. pneumophila ATCC 43290 (bacteria) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.46 Å |
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Authors | Yao, J. / Sun, Q. / Jia, D. |
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Citation | Journal: Proc. Natl. Acad. Sci. U.S.A. / Year: 2018 Title: Mechanism of inhibition of retromer transport by the bacterial effector RidL. Authors: Yao, J. / Yang, F. / Sun, X. / Wang, S. / Gan, N. / Liu, Q. / Liu, D. / Zhang, X. / Niu, D. / Wei, Y. / Ma, C. / Luo, Z.Q. / Sun, Q. / Jia, D. |
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History | Deposition | Jan 13, 2017 | Deposition site: PDBJ / Processing site: PDBJ |
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Revision 1.0 | Jan 24, 2018 | Provider: repository / Type: Initial release |
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Revision 1.1 | May 23, 2018 | Group: Data collection / Database references / Category: citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year |
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Revision 1.2 | Mar 20, 2024 | Group: Data collection / Database references / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id |
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