Method to determine structure: MOLECULAR REPLACEMENT Starting model: "apo" GEMIN5 WD40 repeats Resolution: 1.95→48.02 Å / Cor.coef. Fo:Fc: 0.965 / Cor.coef. Fo:Fc free: 0.951 / SU B: 4.781 / SU ML: 0.127 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.15 / ESU R Free: 0.14 Details: A nearly isomorphous crystal structure was used as the search model for molecular replacement. Model coordinates where transformed with PDBSET to facilitate comparison with other, nearly ...Details: A nearly isomorphous crystal structure was used as the search model for molecular replacement. Model coordinates where transformed with PDBSET to facilitate comparison with other, nearly isomorphous Gemin5 crystal structures. Restraints for the partially resolved GTG residue were prepared on the GRADE server. Not all expected atoms of the GTG ligand were resolved in the electron density. Sulfhydryl groups of some cystyl residue appear chemically modified, based on peaks in the electron density maps. Coot was used for interactive model building. PHENIX.molprobity was used for geometry validation.
Rfactor
Num. reflection
% reflection
Rfree
0.2174
2802
5 %
Rwork
0.1787
-
-
obs
0.1807
52871
98.4 %
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
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