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Open data
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Basic information
| Entry | Database: PDB / ID: 5sy5 | ||||||
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| Title | Crystal Structure of the Heterodimeric NPAS1-ARNT Complex | ||||||
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Keywords | TRANSCRIPTION / bHLH-PAS protein / transcription factor / heterodimeric complex | ||||||
| Function / homology | Function and homology informationXenobiotics / Aryl hydrocarbon receptor signalling / Phase I - Functionalization of compounds / NPAS4 regulates expression of target genes / Regulation of gene expression by Hypoxia-inducible Factor / Endogenous sterols / nuclear aryl hydrocarbon receptor complex / positive regulation of hormone biosynthetic process / positive regulation of protein sumoylation / maternal behavior ...Xenobiotics / Aryl hydrocarbon receptor signalling / Phase I - Functionalization of compounds / NPAS4 regulates expression of target genes / Regulation of gene expression by Hypoxia-inducible Factor / Endogenous sterols / nuclear aryl hydrocarbon receptor complex / positive regulation of hormone biosynthetic process / positive regulation of protein sumoylation / maternal behavior / startle response / aryl hydrocarbon receptor binding / positive regulation of vascular endothelial growth factor production / embryonic placenta development / cis-regulatory region sequence-specific DNA binding / positive regulation of glycolytic process / RNA polymerase II transcription regulatory region sequence-specific DNA binding / response to toxic substance / negative regulation of inflammatory response / RNA polymerase II transcription regulator complex / nuclear receptor activity / sequence-specific double-stranded DNA binding / cellular response to oxidative stress / transcription regulator complex / sequence-specific DNA binding / DNA-binding transcription factor activity, RNA polymerase II-specific / cell differentiation / response to hypoxia / nuclear body / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / protein heterodimerization activity / negative regulation of DNA-templated transcription / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / protein homodimerization activity / positive regulation of transcription by RNA polymerase II / nucleus / cytoplasm Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 3.201 Å | ||||||
Authors | Wu, D. / Su, X. / Potluri, N. / Kim, Y. / Rastinejad, F. | ||||||
Citation | Journal: Elife / Year: 2016Title: NPAS1-ARNT and NPAS3-ARNT crystal structures implicate the bHLH-PAS family as multi-ligand binding transcription factors. Authors: Wu, D. / Su, X. / Potluri, N. / Kim, Y. / Rastinejad, F. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5sy5.cif.gz | 663.3 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5sy5.ent.gz | 546.2 KB | Display | PDB format |
| PDBx/mmJSON format | 5sy5.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sy/5sy5 ftp://data.pdbj.org/pub/pdb/validation_reports/sy/5sy5 | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 5sy7C ![]() 4zp4S S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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