+Open data
-Basic information
Entry | Database: PDB / ID: 5o1t | ||||||
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Title | Solution structure of the RNA binding domain of Nrd1 | ||||||
Components | Protein NRD1 | ||||||
Keywords | RNA BINDING PROTEIN / Nrd1 / RRM / RNA-binding / transcription non-coding RNAs | ||||||
Function / homology | Function and homology information transcription regulatory region RNA binding / antisense RNA transcript catabolic process / Nrd1 complex / sno(s)RNA 3'-end processing / termination of RNA polymerase II transcription, exosome-dependent / tRNA 3'-end processing / CUT catabolic process / snRNA 3'-end processing / nuclear mRNA surveillance / mRNA 3'-end processing ...transcription regulatory region RNA binding / antisense RNA transcript catabolic process / Nrd1 complex / sno(s)RNA 3'-end processing / termination of RNA polymerase II transcription, exosome-dependent / tRNA 3'-end processing / CUT catabolic process / snRNA 3'-end processing / nuclear mRNA surveillance / mRNA 3'-end processing / protein domain specific binding / mRNA binding / RNA binding / nucleus Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | SOLUTION NMR / Minimization | ||||||
Authors | Martinez-Lumbreras, S. / Perez-Canadillas, J.M. | ||||||
Funding support | Spain, 1items
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Citation | Journal: Nucleic Acids Res. / Year: 2017 Title: The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. Authors: Franco-Echevarria, E. / Gonzalez-Polo, N. / Zorrilla, S. / Martinez-Lumbreras, S. / Santiveri, C.M. / Campos-Olivas, R. / Sanchez, M. / Calvo, O. / Gonzalez, B. / Perez-Canadillas, J.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5o1t.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb5o1t.ent.gz | 920.6 KB | Display | PDB format |
PDBx/mmJSON format | 5o1t.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5o1t_validation.pdf.gz | 485.8 KB | Display | wwPDB validaton report |
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Full document | 5o1t_full_validation.pdf.gz | 1.2 MB | Display | |
Data in XML | 5o1t_validation.xml.gz | 137.7 KB | Display | |
Data in CIF | 5o1t_validation.cif.gz | 150.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/o1/5o1t ftp://data.pdbj.org/pub/pdb/validation_reports/o1/5o1t | HTTPS FTP |
-Related structure data
Related structure data | 5o1wC 5o1xC 5o1yC 5o1zC 5o20C C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: Protein | Mass: 20051.533 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: NRD1, YNL251C, N0868 / Production host: Escherichia coli (E. coli) / References: UniProt: P53617 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
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