- PDB-5mij: X-ray structure of carboplatin-encapsulated horse spleen apoferritin -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5mij
Title
X-ray structure of carboplatin-encapsulated horse spleen apoferritin
Components
Ferritin light chain
Keywords
METAL TRANSPORT
Function / homology
Function and homology information
: / intracellular sequestering of iron ion / ferric iron binding / ferrous iron binding / iron ion transport / iron ion binding / cytoplasm Similarity search - Function
Type: DECTRIS EIGER R 4M / Detector: PIXEL / Date: Oct 28, 2016
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9677 Å / Relative weight: 1
Reflection
Resolution: 1.49→104.9 Å / Num. obs: 42236 / % possible obs: 99.7 % / Redundancy: 8.6 % / Rmerge(I) obs: 0.084 / Net I/σ(I): 14.8
Reflection shell
Resolution: 1.49→1.52 Å / Rmerge(I) obs: 0.429 / Mean I/σ(I) obs: 4.2 / % possible all: 99.1
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Processing
Software
Name
Version
Classification
REFMAC
5.8.0103
refinement
iMOSFLM
datareduction
SCALA
datascaling
PHASER
phasing
Refinement
Resolution: 1.49→104.89 Å / Cor.coef. Fo:Fc: 0.964 / Cor.coef. Fo:Fc free: 0.955 / SU B: 1.058 / SU ML: 0.039 / Cross valid method: THROUGHOUT / ESU R: 0.056 / ESU R Free: 0.058 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.18101
2123
5.1 %
RANDOM
Rwork
0.15767
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obs
0.15886
39899
99.51 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK