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Open data
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Basic information
| Entry | Database: PDB / ID: 5m8l | |||||||||
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| Title | Crystal structure of human tyrosinase related protein 1 | |||||||||
Components | 5,6-dihydroxyindole-2-carboxylic acid oxidase | |||||||||
Keywords | UNKNOWN FUNCTION / human tyrosinase related protein 1 / melanin biosynthesis / tyrosinase / oxidoreductase | |||||||||
| Function / homology | Function and homology informationacetoacetic acid metabolic process / Melanin biosynthesis / Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With another compound as one donor, and incorporation of one atom of oxygen into the other donor / tyrosinase activity / positive regulation of melanin biosynthetic process / melanin biosynthetic process / melanocyte differentiation / melanosome organization / melanosome membrane / intracellular vesicle ...acetoacetic acid metabolic process / Melanin biosynthesis / Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With another compound as one donor, and incorporation of one atom of oxygen into the other donor / tyrosinase activity / positive regulation of melanin biosynthetic process / melanin biosynthetic process / melanocyte differentiation / melanosome organization / melanosome membrane / intracellular vesicle / Regulation of MITF-M-dependent genes involved in pigmentation / clathrin-coated endocytic vesicle membrane / melanosome / oxidoreductase activity / endosome membrane / protein homodimerization activity / metal ion binding / cytoplasm Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.35 Å | |||||||||
Authors | Lai, X. / Soler-Lopez, M. / Wichers, H.J. / Dijkstra, B.W. | |||||||||
Citation | Journal: Angew. Chem. Int. Ed. Engl. / Year: 2017Title: Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis. Authors: Lai, X. / Wichers, H.J. / Soler-Lopez, M. / Dijkstra, B.W. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5m8l.cif.gz | 379.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5m8l.ent.gz | 311.2 KB | Display | PDB format |
| PDBx/mmJSON format | 5m8l.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5m8l_validation.pdf.gz | 6.1 MB | Display | wwPDB validaton report |
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| Full document | 5m8l_full_validation.pdf.gz | 6.1 MB | Display | |
| Data in XML | 5m8l_validation.xml.gz | 66.4 KB | Display | |
| Data in CIF | 5m8l_validation.cif.gz | 91.3 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/m8/5m8l ftp://data.pdbj.org/pub/pdb/validation_reports/m8/5m8l | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5m8mC ![]() 5m8nC ![]() 5m8oC ![]() 5m8pC ![]() 5m8qC ![]() 5m8rC ![]() 5m8tC ![]() 3nm8S S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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Homo sapiens (human)
X-RAY DIFFRACTION
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