- PDB-5ltq: Structure of the Yellow Fluorescent Protein lanYFP from Branchios... -
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Basic information
Entry
Database: PDB / ID: 5ltq
Title
Structure of the Yellow Fluorescent Protein lanYFP from Branchiostoma lanceolatum at pH 7.5
Components
Green fluorescent protein blFP-Y3
Keywords
FLUORESCENT PROTEIN
Function / homology
Green fluorescent protein-related / Green fluorescent protein / bioluminescence / Green Fluorescent Protein / Green fluorescent protein / Green fluorescent protein / Beta Barrel / Mainly Beta / Green fluorescent protein blFP-Y3
Function and homology information
Biological species
Branchiostoma lanceolatum (amphioxus)
Method
X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.05 Å
A: Green fluorescent protein blFP-Y3 D: Green fluorescent protein blFP-Y3 B: Green fluorescent protein blFP-Y3 C: Green fluorescent protein blFP-Y3 E: Green fluorescent protein blFP-Y3 H: Green fluorescent protein blFP-Y3 F: Green fluorescent protein blFP-Y3 G: Green fluorescent protein blFP-Y3 I: Green fluorescent protein blFP-Y3 L: Green fluorescent protein blFP-Y3 J: Green fluorescent protein blFP-Y3 K: Green fluorescent protein blFP-Y3 M: Green fluorescent protein blFP-Y3 P: Green fluorescent protein blFP-Y3 N: Green fluorescent protein blFP-Y3 O: Green fluorescent protein blFP-Y3 hetero molecules
A: Green fluorescent protein blFP-Y3 D: Green fluorescent protein blFP-Y3 B: Green fluorescent protein blFP-Y3 C: Green fluorescent protein blFP-Y3 hetero molecules
E: Green fluorescent protein blFP-Y3 H: Green fluorescent protein blFP-Y3 F: Green fluorescent protein blFP-Y3 G: Green fluorescent protein blFP-Y3 hetero molecules
I: Green fluorescent protein blFP-Y3 L: Green fluorescent protein blFP-Y3 J: Green fluorescent protein blFP-Y3 K: Green fluorescent protein blFP-Y3 hetero molecules
M: Green fluorescent protein blFP-Y3 P: Green fluorescent protein blFP-Y3 N: Green fluorescent protein blFP-Y3 O: Green fluorescent protein blFP-Y3 hetero molecules
Resolution: 2.05→49.29 Å / Cor.coef. Fo:Fc: 0.935 / Cor.coef. Fo:Fc free: 0.918 / SU B: 13.562 / SU ML: 0.177 / Cross valid method: THROUGHOUT / ESU R: 0.26 / ESU R Free: 0.197 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25371
10864
5 %
RANDOM
Rwork
0.22535
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obs
0.22677
206403
99.37 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK