|Entry||Database: PDB / ID: 5lp3|
|Title||Three tetrameric rings of Isoaspartyl Dipeptidase fitted in an EM volume.|
|Descriptor||Isoaspartyl dipeptidase (E.C.3.4.19.-)|
|Keywords||HYDROLASE / Designed protein filament / Hydrolase / Isoaspartyl Dipeptidase|
|Specimen source||Escherichia coli / bacteria / エシェリキア・コリ, 大腸菌 /|
|Method||Electron microscopy (10.5 Å resolution / Filament / Single particle)|
|Authors||Garcia-Seisdedos, H. / Empereur-Mot, C. / Elad, N. / Levy, E.D.|
|Citation||Nature, 2017, 548, 244-247|
SummaryFull reportAbout validation report
|Date||Deposition: Aug 11, 2016 / Release: Jul 26, 2017|
Downloads & links
B: Isoaspartyl dipeptidase
C: Isoaspartyl dipeptidase
D: Isoaspartyl dipeptidase
E: Isoaspartyl dipeptidase
A: Isoaspartyl dipeptidase
F: Isoaspartyl dipeptidase
G: Isoaspartyl dipeptidase
H: Isoaspartyl dipeptidase
I: Isoaspartyl dipeptidase
J: Isoaspartyl dipeptidase
K: Isoaspartyl dipeptidase
L: Isoaspartyl dipeptidase
|Experiment||Method: ELECTRON MICROSCOPY|
|EM experiment||Aggregation state: FILAMENT / Reconstruction method: SINGLE PARTICLE|
|Component||Name: Isoaspartyl Dipeptidase / Type: ORGANELLE OR CELLULAR COMPONENT / Entity ID: 1, 2, 3 / Source: RECOMBINANT|
|Molecular weight||Experimental value: NO|
|Source (natural)||Organism: Escherichia coli / Strain: K12|
|Source (recombinant)||Organism: Escherichia coli 'BL21-Gold(DE3)pLysS AG' / Plasmid: pET-30a(+)|
|Buffer solution||pH: 7.5|
|Specimen||Conc.: 0.2 mg/ml / Embedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES|
|Specimen support||Grid material: COPPER / Grid mesh size: 300 / Grid type: Quantifoil|
|Vitrification||Instrument: LEICA EM GP / Cryogen name: ETHANE / Humidity: 95 % / Chamber temperature: 297 kelvins|
-Electron microscopy imaging
|Microscopy||Microscope model: FEI TECNAI 20|
|Electron gun||Electron source: FIELD EMISSION GUN / Accelerating voltage: 200 kV / Illumination mode: FLOOD BEAM|
|Electron lens||Mode: BRIGHT FIELD / C2 aperture diameter: 30 mm|
|Image recording||Electron dose: 32 e/Å2 / Film or detector model: GATAN K2 SUMMIT (4k x 4k)|
|CTF correction||Type: PHASE FLIPPING AND AMPLITUDE CORRECTION|
|Particle selection||Details: Particles were manually selected from filaments only|
Number of particles selected: 38786
|Symmetry||Point symmetry: D4|
|3D reconstruction||Resolution: 10.5 Å / Resolution method: FSC 0.143 CUT-OFF / Number of particles: 17277 / Details: 2 CLASSES WERE MERGED IN THE FINAL RECONSTRUCTION / Symmetry type: POINT|
|Atomic model building||Ref protocol: RIGID BODY FIT|
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