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- PDB-5lil: Structure of Aggregatibacter actinomycetemcomitans MacB bound to ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5lil | ||||||
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Title | Structure of Aggregatibacter actinomycetemcomitans MacB bound to ATPyS (P21) | ||||||
![]() | Macrolide export ATP-binding/permease protein MacB | ||||||
![]() | TRANSPORT PROTEIN / Membrane Protein ABC Transporter | ||||||
Function / homology | ![]() Translocases; Catalysing the translocation of other compounds; Linked to the hydrolysis of a nucleoside triphosphate / transmembrane transporter activity / response to antibiotic / ATP hydrolysis activity / ATP binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Crow, A. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and mechanotransmission mechanism of the MacB ABC transporter superfamily. Authors: Crow, A. / Greene, N.P. / Kaplan, E. / Koronakis, V. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 450.6 KB | Display | ![]() |
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PDB format | ![]() | 370.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 938.9 KB | Display | ![]() |
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Full document | ![]() | 957.9 KB | Display | |
Data in XML | ![]() | 42 KB | Display | |
Data in CIF | ![]() | 56.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5lj6C ![]() 5lj7C ![]() 5lj8C ![]() 5lj9C ![]() 5ljaC ![]() 5naaC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 72114.703 Da / Num. of mol.: 2 / Mutation: E169Q Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: macB / Production host: ![]() ![]() References: UniProt: Q2EHL8, Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to catalyse transmembrane movement of substances #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.98 Å3/Da / Density % sol: 69.1 % |
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Crystal grow | Temperature: 288 K / Method: vapor diffusion, sitting drop Details: PEG 400, Sodium Citrate, Magnesium Chloride, ATPyS, Dodecylmaltopyranoside |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Sep 24, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.98 Å / Relative weight: 1 |
Reflection | Resolution: 3.35→79.95 Å / Num. obs: 63156 / % possible obs: 99.6 % / Redundancy: 9.3 % / Rsym value: 0.284 / Net I/σ(I): 7.7 |
Reflection shell | Rsym value: 1.522 |
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Processing
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Refinement | Resolution: 3.35→79.946 Å / SU ML: 0.42 / Cross valid method: FREE R-VALUE / σ(F): 0 / Phase error: 34.4
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.35→79.946 Å
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Refine LS restraints |
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LS refinement shell |
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