Software Name Version Classification PHENIX1.7.2_869refinement xia2data reduction xia2data scaling PHASERphasing
Refinement Resolution : 2.601→19.907 Å / SU ML : 0.71 / Cross valid method : THROUGHOUT / σ(F) : 1.49 / Phase error : 25.66 Rfactor Num. reflection % reflection Rfree 0.2388 1017 5.36 % Rwork 0.201 - - obs 0.203 18970 97.99 %
Solvent computation Shrinkage radii : 0.73 Å / VDW probe radii : 1 Å / Bsol : 34.722 Å2 / ksol : 0.358 e/Å3 Displacement parameters Baniso -1 Baniso -2 Baniso -3 1- -2.9893 Å2 0 Å2 -2.7849 Å2 2- - 1.0965 Å2 -0 Å2 3- - - 1.8928 Å2
Refinement step Cycle : LAST / Resolution : 2.601→19.907 ÅProtein Nucleic acid Ligand Solvent Total Num. atoms 4724 0 0 95 4819
Refine LS restraints Refine-ID Type Dev ideal Number X-RAY DIFFRACTION f_bond_d0.003 4778 X-RAY DIFFRACTION f_angle_d0.738 6464 X-RAY DIFFRACTION f_dihedral_angle_d14.863 1766 X-RAY DIFFRACTION f_chiral_restr0.053 744 X-RAY DIFFRACTION f_plane_restr0.004 886
Refine LS restraints NCS Ens-ID Dom-ID Auth asym-ID Number Refine-ID Type Rms dev position (Å)1 1 A1172 X-RAY DIFFRACTION POSITIONAL1 2 B1172 X-RAY DIFFRACTION POSITIONAL0.445 1 3 C1172 X-RAY DIFFRACTION POSITIONAL0.641 1 4 D1172 X-RAY DIFFRACTION POSITIONAL0.519
LS refinement shell Resolution (Å)Rfactor Rfree Num. reflection Rfree Rfactor Rwork Num. reflection Rwork Refine-ID % reflection obs (%)2.6011-2.7379 0.3339 129 0.2799 2235 X-RAY DIFFRACTION 86 2.7379-2.9089 0.3551 127 0.2722 2613 X-RAY DIFFRACTION 100 2.9089-3.1328 0.2734 154 0.2493 2563 X-RAY DIFFRACTION 100 3.1328-3.4465 0.2827 158 0.2202 2608 X-RAY DIFFRACTION 100 3.4465-3.9419 0.209 153 0.1822 2603 X-RAY DIFFRACTION 100 3.9419-4.9537 0.2103 142 0.1676 2628 X-RAY DIFFRACTION 100 4.9537-19.9072 0.1945 154 0.175 2703 X-RAY DIFFRACTION 100
Refinement TLS params. Method : refined / Refine-ID : X-RAY DIFFRACTION
Show large table (25 x 39) Hide large table ID L11 (°2 )L12 (°2 )L13 (°2 )L22 (°2 )L23 (°2 )L33 (°2 )S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2 )T12 (Å2 )T13 (Å2 )T22 (Å2 )T23 (Å2 )T33 (Å2 )Origin x (Å)Origin y (Å)Origin z (Å)1 0.4577 0.2354 -0.0822 0.3265 -0.2451 0.2261 0.0094 -0.0952 0.1185 0.0602 -0.0689 -0.0614 -0.283 -0.0563 -0.0694 0.1642 0.0319 0.0131 0.0833 -0.053 0.2241 -3.4473 21.8214 42.5186 2 0.3871 -0.2381 0.1971 0.9352 -0.6147 0.4166 -0.0152 0.009 0.4795 0.1306 -0.2332 -0.2505 -0.3036 -0.0853 -0.0741 0.2144 0.0316 0.0265 0.1115 0.0013 0.1997 5.6549 19.7251 40.7961 3 0.0441 -0.0595 0.0314 0.1102 0.0138 0.1269 0.0878 -0.0864 -0.0093 0.0533 -0.0208 0.075 -0.0243 0.0156 0.0409 0.1048 -0.2051 -0.038 -0.0006 0.0231 0.2387 0.1867 10.1129 43.7086 4 0.1834 -0.0177 0.2015 0.4794 -0.2779 0.3581 -0.0359 0.0301 0.1587 -0.1112 -0.1983 -0.0591 0.0263 0.159 -0.0241 0.3192 -0.0229 0.0003 0.1886 -0.0013 0.1753 11.9059 15.1045 37.1251 5 0.2554 -0.1073 -0.074 0.0988 0.1121 0.1426 0.1126 -0.0922 0.0635 0.0117 0.0152 -0.1328 -0.0545 -0.0227 0.177 0.1281 -0.1505 0.0318 -0.2119 0.1128 0.076 11.5269 8.994 47.0184 6 0.8314 -0.3596 -0.497 0.4587 0.1588 0.7943 -0.1166 0.0743 -0.2086 -0.0845 0.0145 0.1126 0.1416 -0.2277 -0.2129 0.1914 -0.0151 0.0267 0.1374 0.1253 0.0924 21.562 10.6655 39.4446 7 0.9541 -0.2223 0.191 0.2565 -0.3049 0.357 -0.0377 -0.2344 0.2147 0.1162 -0.1651 -0.1402 -0.2884 0.0713 -0.0226 0.1363 -0.1819 0.1145 -0.0695 0.3365 -0.1388 20.2315 6.4023 50.6024 8 0.2002 0.0458 0.001 0.0099 -0.0002 -0.0001 0.0175 0.0909 0.1018 -0.0244 -0.1074 -0.1658 -0.0383 0.2064 -0.169 -0.0027 -0.119 0.1644 0.341 0.2119 0.3541 29.9456 7.9841 42.7421 9 0.0969 0.0554 -0.0309 0.1703 -0.0261 0.074 0.06 -0.0889 0.0675 0.119 -0.1173 0.049 0.0246 -0.0016 -0.0961 0.188 -0.3261 -0.0488 0.4228 0.3498 0.3865 29.5081 5.9718 54.9117 10 0.2901 -0.0529 0.1176 0.1914 0.0199 0.344 -0.1496 0.0285 0.1127 0.0467 -0.0718 -0.0489 -0.181 0.1565 -1.0258 0.2418 -0.0696 -0.15 0.314 0.0077 0.0737 25.7666 -14.7591 73.6888 11 0.3336 -0.5422 0.2987 0.9161 -0.3888 0.5602 0.1239 -0.0283 -0.0419 0.0236 0.1017 0.0976 0.1018 -0.0172 0.5448 0.2836 0.0995 0.0798 0.0739 0.0641 0.0408 20.7241 -20.6541 68.3047 12 0.0757 -0.1285 0.0522 0.2084 -0.0841 0.0358 -0.0292 0.0231 0.0685 0.1367 -0.007 -0.022 -0.1499 0.0166 -0.1762 0.1633 -0.1794 0.0559 0.1823 0.1621 -0.1416 19.4046 -9.8702 64.6258 13 0.2985 -0.2085 0.313 0.1496 -0.1978 0.4863 -0.0936 0.0541 0.0784 -0.0317 -0.0578 -0.0888 0.0982 0.181 -0.0247 0.1582 -0.0167 0.0134 0.1035 0.0177 0.0815 15.6987 -19.3235 59.7796 14 0.1955 0.031 0.1503 0.2617 0.218 0.3756 0.0082 -0.1378 0.0489 0.1227 -0.0686 0.0841 -0.0335 -0.1098 -0.2956 -0.0051 -0.208 0.1627 0.0422 0.123 -0.132 13.1385 -8.1673 58.1026 15 0.5324 -0.3998 -0.254 0.7751 0.2787 0.3242 0.0698 -0.0662 -0.1425 -0.0299 0.0807 0.1353 0.1363 0.0054 0.2612 0.2037 -0.0465 -0.0621 0.0609 0.0341 0.1762 4.8029 -14.2958 54.6059 16 0.5309 0.2338 -0.1562 0.4656 0.3572 0.5429 0.1292 0.0384 0.0932 -0.1772 0.0684 0.0501 -0.2499 0.1644 0.3514 0.2301 -0.0786 -0.0718 -0.0613 0.0555 0.1297 2.8252 -10.3813 49.4747 17 0.2061 -0.015 0.1814 0.4174 0.1071 0.1952 0.0479 -0.1413 -0.1763 0.1151 -0.0694 0.1632 0.0847 -0.0829 -0.4131 -0.1288 -0.3385 -0.0254 -0.1848 0.1445 0.1573 -5.2487 -5.3434 51.0985 18 0.0144 -0.0041 -0.004 0.005 0.0071 0.0063 -0.0504 0.014 0.1749 -0.0101 -0.1687 0.2626 0.1268 0.1841 0.0001 0.7043 0.0261 0.2888 0.6845 -0.0348 0.7635 14.5364 -7.6344 -4.0926 19 0.0015 0.0029 -0.0004 0.0065 0.0035 0.0063 0.0592 0.0118 -0.0896 0.0021 0.0435 -0.0677 0.0583 0.1873 -0.0002 1.0699 0.1639 0.287 0.8311 0.2044 1.2083 8.674 -14.3459 -0.0908 20 0.0117 0.0052 0.0079 0.0022 0.0048 0.0078 0.1493 -0.1108 -0.0857 -0.0355 0.211 -0.0918 -0.2157 0.222 0.0013 0.8072 -0.0029 0.1375 1.1881 0.2177 1.0758 17.9934 -4.1042 2.09 21 0.003 -0.0052 -0.0012 0.0119 -0.0042 0.0092 -0.0867 -0.0534 -0.0025 0.0074 -0.0096 -0.14 -0.0698 0.3572 -0 0.7407 -0.1204 0.0467 0.7001 -0.0203 0.5438 7.8602 -0.4873 3.4481 22 0.0022 -0.0034 -0.001 0.0034 0.0022 0.0061 -0.0355 -0.0528 -0.055 0.0644 0.0018 0.0224 0.0703 0.059 0.0007 0.7545 0.2924 0.3044 0.9696 0.4056 0.9093 7.1958 -9.7143 8.8498 23 0.0649 -0.0159 0.014 0.0079 0.0051 0.0169 0.0648 -0.0053 -0.2534 -0.0059 0.0629 -0.2037 0.1849 0.1876 -0.0006 0.7808 -0.2178 0.0826 1.196 -0.1164 0.8595 15.8317 3.4924 9.7793 24 0.0015 -0.005 -0.0037 0.033 0.0329 0.0304 -0.1594 -0.2439 0.0668 -0.2586 0.0452 0.219 -0.1608 0.393 0.0001 0.6483 -0.0579 0.1993 0.7735 0.0035 0.5584 3.8287 3.102 10.5222 25 0.0118 0.0265 -0.0086 0.067 -0.0238 0.0073 0.0425 -0.2062 0.2847 -0.255 0.0813 -0.1067 -0.5424 0.2529 -0.0019 1.0299 -0.3637 0.1125 1.2679 -0.1161 0.9816 11.6658 8.2456 15.777 26 0.0016 0.0019 -0.0005 0.1105 0.0914 0.0759 -0.0121 -0.487 0.1698 -0.279 0.0548 -0.0237 -0.1331 0.1288 -0.0099 0.8505 -0.3065 0.4061 0.8142 -0.1648 0.9343 0.4112 10.7752 14.4514 27 0.0151 0.0152 -0.0094 0.0129 -0.0094 0.0127 0.184 0.0289 0.2231 -0.1622 -0.0239 -0.069 -0.0743 -0.007 0.0014 1.3195 -0.3391 0.1446 1.1468 -0.3426 1.1586 9.2104 19.0223 18.5756 28 0.0009 0.0009 -0.0014 0.0118 -0.0099 0.0076 0.0506 -0.072 0.0491 -0.0623 0.0247 -0.0433 -0.1272 0.0275 0.0003 1.4325 -0.0947 0.3563 0.8715 -0.1178 1.4142 0.6367 22.1509 12.4377 29 0.0004 -0.0019 0.0014 0.01 -0.0094 0.0096 0.046 0.0327 0.1311 -0.0721 0.0219 0.0992 -0.1139 -0.018 0.0013 1.5753 0.0155 0.4044 0.8712 -0.015 1.4827 -5.7327 18.7132 18.6856 30 0.0053 -0.0012 -0.0073 0.0212 0.049 0.1152 0.1519 0.0467 0.0591 -0.042 0.0339 0.1411 0.0296 -0.0389 0.0911 1.0951 0.2132 0.2114 0.5716 0.2789 1.2268 -28.3595 15.3589 24.9706 31 0.4321 0.1103 0.2567 0.0312 0.0656 0.1573 0.3783 0.1359 0.4649 0.0576 0.0699 0.2329 -0.6836 -0.0246 0.1952 0.651 0.0204 0.1434 0.4749 0.2363 0.575 -24.9133 6.9372 28.097 32 0.0767 -0.0013 -0.0139 0.0003 0.0001 0.0023 0.067 -0.0978 0.1908 -0.0501 0.0119 0.0887 -0.0385 -0.0101 0.0034 0.9744 -0.1727 0.2624 0.5321 0.1801 1.0117 -16.4117 13.6513 24.3167 33 0.0446 -0.0198 0.0207 0.0309 -0.026 0.0246 0.1736 -0.0877 0.4652 -0.0332 0.0803 -0.1968 -0.6769 0.3025 0.0098 0.5209 -0.1125 0.0678 0.4371 0.0866 0.4104 -19.3242 2.1694 32.3627 34 0.0178 0.0175 -0.0211 0.0156 -0.0195 0.0238 0.1886 0.0138 -0.1463 -0.0318 -0.1088 0.0875 -0.1514 0.0811 0.0004 0.4484 -0.0331 0.0249 0.4313 0.1261 0.4044 -16.9179 -1.4729 22.2814 35 0.0021 -0.0028 0.0043 0.0045 -0.0059 0.0087 0.064 -0.0032 0.0826 -0.1072 0.0897 0.005 -0.1853 0.1326 0.0002 0.5177 -0.1284 0.2195 0.6703 0.0325 0.5484 -9.8152 5.5501 21.9409 36 0.1914 -0.1434 0.0998 0.1084 -0.0771 0.0577 -0.4013 -0.2289 -0.0783 0.1328 -0.1619 -0.2268 -0.3028 0.6852 -0.0142 0.7225 0.1171 0.1084 0.7707 0.3296 0.5946 -12.8489 -5.217 31.1611 37 0.0236 0.0039 0.0135 0.2192 0.0279 0.0158 -0.2649 -0.3428 -0.0059 -0.2644 -0.0278 0.1198 0.3391 0.7282 -0.0178 0.6286 0.1431 0.2251 0.6274 0.1722 0.5406 -9.037 -6.0947 20.0868 38 0.0227 -0.0402 0.0081 0.0763 -0.0104 0.0053 -0.1375 -0.068 -0.1645 0.0491 -0.0692 0.1455 0.0843 0.1028 -0.132 1.0721 0.47 0.3628 1.0656 0.4654 1.31 -8.9496 -14.8379 29.3236 39 0.0002 0.0025 0.0006 0.0216 0.0073 0.0037 -0.0976 -0.0537 -0.0177 0.0693 0.0064 -0.0311 0.2418 0.1315 -0.001 1.4202 0.27 0.5276 0.8109 0.1249 1.2856 -6.9908 -15.7083 17.0588
Refinement TLS group Show large table (4 x 39) Hide large table ID Refine-ID Refine TLS-ID Selection details 1 X-RAY DIFFRACTION 1 chain 'A' and (resseq 0:24)2 X-RAY DIFFRACTION 2 chain 'A' and (resseq 25:48)3 X-RAY DIFFRACTION 3 chain 'A' and (resseq 49:57)4 X-RAY DIFFRACTION 4 chain 'A' and (resseq 58:71)5 X-RAY DIFFRACTION 5 chain 'A' and (resseq 72:91)6 X-RAY DIFFRACTION 6 chain 'A' and (resseq 92:104)7 X-RAY DIFFRACTION 7 chain 'A' and (resseq 105:124)8 X-RAY DIFFRACTION 8 chain 'A' and (resseq 125:137)9 X-RAY DIFFRACTION 9 chain 'A' and (resseq 138:157)10 X-RAY DIFFRACTION 10 chain 'B' and (resseq -2:24) 11 X-RAY DIFFRACTION 11 chain 'B' and (resseq 25:38)12 X-RAY DIFFRACTION 12 chain 'B' and (resseq 39:57)13 X-RAY DIFFRACTION 13 chain 'B' and (resseq 58:71)14 X-RAY DIFFRACTION 14 chain 'B' and (resseq 72:91)15 X-RAY DIFFRACTION 15 chain 'B' and (resseq 92:114)16 X-RAY DIFFRACTION 16 chain 'B' and (resseq 115:137)17 X-RAY DIFFRACTION 17 chain 'B' and (resseq 138:157)18 X-RAY DIFFRACTION 18 chain 'C' and (resseq 0:13)19 X-RAY DIFFRACTION 19 chain 'C' and (