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Yorodumi- PDB-5jyv: NMR structure of foldswitch-stablized KaiB in complex with pseudo... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5jyv | ||||||
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Title | NMR structure of foldswitch-stablized KaiB in complex with pseudo receiver domain of CikA from Thermosynechococcus elongatus | ||||||
Components |
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Keywords | Sigaling protein / Circadian Clock / Signaling protein complex | ||||||
Function / homology | Function and homology information negative regulation of phosphorylation / cell cycle / histidine kinase / phosphorelay sensor kinase activity / circadian rhythm / rhythmic process / cell division / ATP binding Similarity search - Function | ||||||
Biological species | Thermosynechococcus elongatus (bacteria) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Tseng, R.D. / LiWang, A.L. | ||||||
Funding support | United States, 1items
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Citation | Journal: Science / Year: 2017 Title: Structural basis of the day-night transition in a bacterial circadian clock. Authors: Tseng, R. / Goularte, N.F. / Chavan, A. / Luu, J. / Cohen, S.E. / Chang, Y.G. / Heisler, J. / Li, S. / Michael, A.K. / Tripathi, S. / Golden, S.S. / LiWang, A. / Partch, C.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5jyv.cif.gz | 1.3 MB | Display | PDBx/mmCIF format |
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PDB format | pdb5jyv.ent.gz | 1.1 MB | Display | PDB format |
PDBx/mmJSON format | 5jyv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5jyv_validation.pdf.gz | 417.4 KB | Display | wwPDB validaton report |
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Full document | 5jyv_full_validation.pdf.gz | 651.6 KB | Display | |
Data in XML | 5jyv_validation.xml.gz | 83.8 KB | Display | |
Data in CIF | 5jyv_validation.cif.gz | 110.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jy/5jyv ftp://data.pdbj.org/pub/pdb/validation_reports/jy/5jyv | HTTPS FTP |
-Related structure data
Related structure data | 5jwoC 5jwqC 5jwrC 5jytC 5jyuC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12899.736 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermosynechococcus elongatus (strain BP-1) (bacteria) Strain: BP-1 / Gene: tll0899 Production host: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (bacteria) References: UniProt: Q8DKG0 |
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#2: Protein | Mass: 11779.870 Da / Num. of mol.: 1 Mutation: Y8A, Y94A, N29A, G89A, D91R, FLAG tag C-terminus insertion, C-terminal truncation after Residue D99 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermosynechococcus elongatus (bacteria) Strain: BP-1 / Gene: kaiB, tlr0482 Production host: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (bacteria) References: UniProt: Q79V61 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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