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- PDB-5jyu: NMR structure of pseudo receiver domain of CikA from Thermosynech... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5jyu | ||||||
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Title | NMR structure of pseudo receiver domain of CikA from Thermosynechococcus elongatus | ||||||
![]() | Two-component sensor histidine kinase | ||||||
![]() | Sigaling protein / Circadian Clock / Signaling protein | ||||||
Function / homology | ![]() histidine kinase / phosphorelay sensor kinase activity / rhythmic process / cell cycle / cell division / ATP binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Tseng, R.D. / LiWang, A.L. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural basis of the day-night transition in a bacterial circadian clock. Authors: Tseng, R. / Goularte, N.F. / Chavan, A. / Luu, J. / Cohen, S.E. / Chang, Y.G. / Heisler, J. / Li, S. / Michael, A.K. / Tripathi, S. / Golden, S.S. / LiWang, A. / Partch, C.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 709 KB | Display | ![]() |
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PDB format | ![]() | 594.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 536.8 KB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 77.7 KB | Display | |
Data in CIF | ![]() | 104.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5jwoC ![]() 5jwqC ![]() 5jwrC ![]() 5jytC ![]() 5jyvC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 12899.736 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: BP-1 / Gene: tll0899 / Plasmid: pET28b Production host: ![]() ![]() References: UniProt: Q8DKG0 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0.1 mM / Label: condition_1 / pH: 7 / Pressure: 1 atm / Temperature: 25 C |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |