Entry | Database: PDB / ID: 5jsb |
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Title | Crystal structure of Mcl1-inhibitor complex |
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Components | - Induced myeloid leukemia cell differentiation protein Mcl-1
- Mcl-1 inhibitor
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Keywords | Viral Protein/Inhibitor / McL-1 / antiMcl1 / complex / Viral Protein-Inhibitor complex |
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Function / homology | Function and homology information
positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / cellular homeostasis / cell fate determination / channel activity / mitochondrial fusion / Bcl-2 family protein complex / BH3 domain binding / negative regulation of anoikis / negative regulation of extrinsic apoptotic signaling pathway in absence of ligand / protein transmembrane transporter activity ...positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / cellular homeostasis / cell fate determination / channel activity / mitochondrial fusion / Bcl-2 family protein complex / BH3 domain binding / negative regulation of anoikis / negative regulation of extrinsic apoptotic signaling pathway in absence of ligand / protein transmembrane transporter activity / extrinsic apoptotic signaling pathway in absence of ligand / negative regulation of autophagy / release of cytochrome c from mitochondria / response to cytokine / intrinsic apoptotic signaling pathway in response to DNA damage / Signaling by ALK fusions and activated point mutants / regulation of apoptotic process / Interleukin-4 and Interleukin-13 signaling / mitochondrial outer membrane / positive regulation of apoptotic process / protein heterodimerization activity / DNA damage response / negative regulation of apoptotic process / protein homodimerization activity / mitochondrion / nucleoplasm / membrane / nucleus / cytoplasm / cytosolSimilarity search - Function Ribosome-recycling factor / Apoptosis regulator, Mcl-1 / Topoisomerase I; Chain A, domain 4 / Blc2-like / Apoptosis Regulator Bcl-x / Apoptosis regulator, Bcl-2, BH3 motif, conserved site / Apoptosis regulator, Bcl-2 family BH3 motif signature. / Apoptosis regulator, Bcl-2, BH1 motif, conserved site / Apoptosis regulator, Bcl-2 family BH1 motif signature. / Apoptosis regulator, Bcl-2, BH2 motif, conserved site ...Ribosome-recycling factor / Apoptosis regulator, Mcl-1 / Topoisomerase I; Chain A, domain 4 / Blc2-like / Apoptosis Regulator Bcl-x / Apoptosis regulator, Bcl-2, BH3 motif, conserved site / Apoptosis regulator, Bcl-2 family BH3 motif signature. / Apoptosis regulator, Bcl-2, BH1 motif, conserved site / Apoptosis regulator, Bcl-2 family BH1 motif signature. / Apoptosis regulator, Bcl-2, BH2 motif, conserved site / Apoptosis regulator, Bcl-2 family BH2 motif signature. / BCL (B-Cell lymphoma); contains BH1, BH2 regions / Bcl-2 family / Bcl-2, Bcl-2 homology region 1-3 / Bcl2-like / Apoptosis regulator proteins, Bcl-2 family / BCL2-like apoptosis inhibitors family profile. / Bcl-2-like superfamily / Orthogonal Bundle / Mainly AlphaSimilarity search - Domain/homology |
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Biological species | Homo sapiens (human) synthetic construct (others) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.74 Å |
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Authors | Shen, B.W. / Stoddard, B.L. |
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Funding support | United States, 1items Organization | Grant number | Country |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | NIH R01 GM115545 | United States |
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Citation | Journal: Elife / Year: 2016 Title: Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer. Authors: Berger, S. / Procko, E. / Margineantu, D. / Lee, E.F. / Shen, B.W. / Zelter, A. / Silva, D.A. / Chawla, K. / Herold, M.J. / Garnier, J.M. / Johnson, R. / MacCoss, M.J. / Lessene, G. / Davis, ...Authors: Berger, S. / Procko, E. / Margineantu, D. / Lee, E.F. / Shen, B.W. / Zelter, A. / Silva, D.A. / Chawla, K. / Herold, M.J. / Garnier, J.M. / Johnson, R. / MacCoss, M.J. / Lessene, G. / Davis, T.N. / Stayton, P.S. / Stoddard, B.L. / Fairlie, W.D. / Hockenbery, D.M. / Baker, D. |
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History | Deposition | May 7, 2016 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Nov 16, 2016 | Provider: repository / Type: Initial release |
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Revision 1.1 | Dec 7, 2016 | Group: Other |
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Revision 1.2 | Sep 20, 2017 | Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization |
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Revision 1.3 | Dec 25, 2019 | Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization |
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Revision 1.4 | Mar 6, 2024 | Group: Data collection / Database references / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id |
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Revision 1.5 | Apr 3, 2024 | Group: Refinement description / Category: pdbx_initial_refinement_model |
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