Entry Database : PDB / ID : 5hn4 Structure visualization Downloads & linksTitle Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and homoisocitrate ComponentsHomoisocitrate dehydrogenase Details Keywords OXIDOREDUCTASE / homoisocitrate dehydrogenase / beta-decarboxylating dehydrogenaseFunction / homology Function and homology informationFunction Domain/homology Component
isocitrate dehydrogenase (NAD+) activity / 3-isopropylmalate dehydrogenase activity / isocitrate metabolic process / L-leucine biosynthetic process / tricarboxylic acid cycle / NAD binding / magnesium ion binding Similarity search - Function Isopropylmalate/isohomocitrate dehydrogenase / Isopropylmalate Dehydrogenase / Isopropylmalate Dehydrogenase / Isocitrate/isopropylmalate dehydrogenase, conserved site / Isocitrate and isopropylmalate dehydrogenases signature. / Isopropylmalate dehydrogenase-like domain / Isocitrate/isopropylmalate dehydrogenase / Isocitrate/isopropylmalate dehydrogenase / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homologyBiological species Thermococcus kodakarensis (archaea)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.64 Å DetailsAuthors Shimizu, T. / Tomita, T. / Nishiyama, M. CitationJournal : Biochem. J. / Year : 2017Title : Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensisAuthors : Shimizu, T. / Yin, L. / Yoshida, A. / Yokooji, Y. / Hachisuka, S.I. / Sato, T. / Tomita, T. / Nishida, H. / Atomi, H. / Kuzuyama, T. / Nishiyama, M. History Deposition Jan 18, 2016 Deposition site : RCSB / Processing site : PDBJRevision 1.0 Dec 7, 2016 Provider : repository / Type : Initial releaseRevision 1.1 Jan 4, 2017 Group : Database referencesRevision 1.2 Feb 19, 2020 Group : Data collection / Category : diffrn_source / Item : _diffrn_source.pdbx_synchrotron_siteRevision 1.3 Nov 8, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_symmetry / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_symmetry
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