[English] 日本語
![](img/lk-miru.gif)
- PDB-5gtb: crystal structure of intermembrane space region of the ARC6-PDV2 ... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 5gtb | ||||||
---|---|---|---|---|---|---|---|
Title | crystal structure of intermembrane space region of the ARC6-PDV2 complex | ||||||
![]() |
| ||||||
![]() | PLANT PROTEIN / beta barrel / key in the lock / complex | ||||||
Function / homology | ![]() : / response to gibberellin / chloroplast inner membrane / chloroplast organization / chloroplast fission / chloroplast envelope / plastid / chloroplast / : / protein homodimerization activity / mitochondrion Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Feng, Y. / Wang, W. | ||||||
![]() | ![]() Title: Structural insights into the coordination of plastid division by the ARC6-PDV2 complex Authors: Wang, W. / Li, J. / Sun, Q. / Yu, X. / Zhang, W. / Jia, N. / An, C. / Li, Y. / Dong, Y. / Han, F. / Chang, N. / Liu, X. / Zhu, Z. / Yu, Y. / Fan, S. / Yang, M. / Luo, S.Z. / Gao, H. / Feng, Y. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 44.3 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 30 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 433.2 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 435.3 KB | Display | |
Data in XML | ![]() | 8 KB | Display | |
Data in CIF | ![]() | 9.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5hadSC S: Starting model for refinement C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 17320.494 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|---|
#2: Protein/peptide | Mass: 2745.134 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 5.51 Å3/Da / Density % sol: 77.7 % |
---|---|
Crystal grow | Temperature: 291 K / Method: vapor diffusion / Details: PEG2000MME, Tris pH6.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Nov 9, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9796 Å / Relative weight: 1 |
Reflection | Resolution: 2.871→27.438 Å / Num. obs: 10239 / % possible obs: 93.82 % / Redundancy: 12.2 % / Rmerge(I) obs: 0.076 / Net I/σ(I): 33.8 |
Reflection shell | Resolution: 2.87→2.92 Å |
-
Processing
Software |
| ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: 5HAD Resolution: 2.871→27.438 Å / SU ML: 0.4 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 32.8
| ||||||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.871→27.438 Å
| ||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||
LS refinement shell |
|