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Open data
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Basic information
Entry | Database: PDB / ID: 5fl3 | ||||||
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Title | PilT2 from Thermus thermophilus | ||||||
![]() | PILI RETRACTION PROTEIN PILT | ||||||
![]() | TRANSPORT PROTEIN / ATPASE | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Karuppiah, V. / Derrick, J.P. | ||||||
![]() | ![]() Title: Pilt2 from Thermus Thermophilus Authors: Karuppiah, V. / Derrick, J.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 82 KB | Display | ![]() |
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PDB format | ![]() | 62 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 791.1 KB | Display | ![]() |
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Full document | ![]() | 794.1 KB | Display | |
Data in XML | ![]() | 15.1 KB | Display | |
Data in CIF | ![]() | 20.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2ewvS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 41194.621 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-ADP / |
#3: Chemical | ChemComp-GOL / |
#4: Chemical | ChemComp-CL / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.85 Å3/Da / Density % sol: 56.9 % / Description: NONE |
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Crystal grow | Details: 0.1M BIS-TRIS/HCL PH 5.5, 1%(W/V) PEG 3350, 1.0 M AMMONIUM SULFATE |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Apr 18, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9 Å / Relative weight: 1 |
Reflection | Resolution: 2.52→42.76 Å / Num. obs: 15793 / % possible obs: 99.9 % / Observed criterion σ(I): 2.4 / Redundancy: 6.8 % / Biso Wilson estimate: 44.26 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 19.9 |
Reflection shell | Resolution: 2.52→2.59 Å / Redundancy: 6.6 % / Rmerge(I) obs: 0.76 / Mean I/σ(I) obs: 2.4 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2EWV Resolution: 2.52→42.761 Å / SU ML: 0.35 / σ(F): 1.36 / Phase error: 25.38 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.52→42.761 Å
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Refine LS restraints |
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LS refinement shell |
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