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- PDB-5ehd: Crystal structure of human nucleophosmin-core in complex with cyt... -

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基本情報

登録情報
データベース: PDB / ID: 5ehd
タイトルCrystal structure of human nucleophosmin-core in complex with cytochrome c
要素Nucleophosmin
キーワードOXIDOREDUCTASE / nucleolus / histone assembly / citochrome c / apoptosis
機能・相同性
機能・相同性情報


regulation of eIF2 alpha phosphorylation by dsRNA / regulation of mRNA stability involved in cellular response to UV / regulation of endoribonuclease activity / negative regulation of centrosome duplication / regulation of endodeoxyribonuclease activity / positive regulation of cell cycle G2/M phase transition / regulation of centriole replication / granular component / TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation / negative regulation of protein kinase activity by regulation of protein phosphorylation ...regulation of eIF2 alpha phosphorylation by dsRNA / regulation of mRNA stability involved in cellular response to UV / regulation of endoribonuclease activity / negative regulation of centrosome duplication / regulation of endodeoxyribonuclease activity / positive regulation of cell cycle G2/M phase transition / regulation of centriole replication / granular component / TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation / negative regulation of protein kinase activity by regulation of protein phosphorylation / SARS-CoV-1-host interactions / Tat protein binding / regulation of centrosome duplication / ALK mutants bind TKIs / spindle pole centrosome / Nuclear import of Rev protein / centrosome cycle / nucleocytoplasmic transport / TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain / protein kinase inhibitor activity / ribosomal large subunit binding / ribosomal small subunit binding / NF-kappaB binding / ribosomal large subunit export from nucleus / ribosomal small subunit export from nucleus / Nuclear events stimulated by ALK signaling in cancer / ribosomal subunit export from nucleus / core promoter sequence-specific DNA binding / Deposition of new CENPA-containing nucleosomes at the centromere / ribosome assembly / SUMOylation of transcription cofactors / ribosomal large subunit biogenesis / positive regulation of translation / protein-DNA complex / intracellular protein transport / PKR-mediated signaling / protein localization / cellular response to UV / : / cellular senescence / unfolded protein binding / Signaling by ALK fusions and activated point mutants / nucleosome assembly / ribosomal small subunit biogenesis / positive regulation of NF-kappaB transcription factor activity / histone binding / DNA-binding transcription factor binding / transcription coactivator activity / rRNA binding / chromatin remodeling / ribonucleoprotein complex / negative regulation of cell population proliferation / DNA repair / focal adhesion / centrosome / chromatin binding / positive regulation of cell population proliferation / nucleolus / negative regulation of apoptotic process / protein kinase binding / positive regulation of DNA-templated transcription / signal transduction / protein homodimerization activity / positive regulation of transcription by RNA polymerase II / protein-containing complex / RNA binding / nucleoplasm / membrane / nucleus / cytoplasm / cytosol
類似検索 - 分子機能
Nucleoplasmin core domain / Nucleophosmin, C-terminal / Nucleophosmin C-terminal domain / Nucleoplasmin core domain / Nucleoplasmin core domain superfamily / Nucleoplasmin/nucleophosmin domain / Nucleoplasmin family / Jelly Rolls / Sandwich / Mainly Beta
類似検索 - ドメイン・相同性
生物種Homo sapiens (ヒト)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.55 Å
データ登録者Bernardo-Garcia, N. / Hermoso, J.A. / Gonzalez-Arzola, K. / Diaz-Moreno, I. / De la Rosa, M.A.
引用ジャーナル: To Be Published
タイトル: Crystal structure of human nucleophosmin-core in complex with cytochrome c
著者: Bernardo-Garcia, N. / Hermoso, J.A. / Gonzalez-Arzola, K. / Diaz-Moreno, I. / De la Rosa, M.A.
履歴
登録2015年10月28日登録サイト: RCSB / 処理サイト: PDBE
改定 1.02016年11月9日Provider: repository / タイプ: Initial release
改定 1.12024年1月10日Group: Data collection / Database references / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Nucleophosmin
B: Nucleophosmin
C: Nucleophosmin
D: Nucleophosmin
E: Nucleophosmin
F: Nucleophosmin
G: Nucleophosmin
H: Nucleophosmin
I: Nucleophosmin
J: Nucleophosmin
a: Nucleophosmin
b: Nucleophosmin
c: Nucleophosmin
d: Nucleophosmin
e: Nucleophosmin
f: Nucleophosmin
g: Nucleophosmin
h: Nucleophosmin
i: Nucleophosmin
j: Nucleophosmin
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)253,60924
ポリマ-253,46720
非ポリマー1424
4,234235
1
A: Nucleophosmin
B: Nucleophosmin
C: Nucleophosmin
D: Nucleophosmin
E: Nucleophosmin
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)63,4026
ポリマ-63,3675
非ポリマー351
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area10410 Å2
ΔGint-69 kcal/mol
Surface area20810 Å2
手法PISA
2
F: Nucleophosmin
G: Nucleophosmin
H: Nucleophosmin
I: Nucleophosmin
J: Nucleophosmin
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)63,4026
ポリマ-63,3675
非ポリマー351
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area10340 Å2
ΔGint-74 kcal/mol
Surface area21320 Å2
手法PISA
3
a: Nucleophosmin
b: Nucleophosmin
c: Nucleophosmin
d: Nucleophosmin
e: Nucleophosmin
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)63,4026
ポリマ-63,3675
非ポリマー351
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area10200 Å2
ΔGint-73 kcal/mol
Surface area20770 Å2
手法PISA
4
f: Nucleophosmin
g: Nucleophosmin
h: Nucleophosmin
i: Nucleophosmin
j: Nucleophosmin
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)63,4026
ポリマ-63,3675
非ポリマー351
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area10400 Å2
ΔGint-71 kcal/mol
Surface area20750 Å2
手法PISA
単位格子
Length a, b, c (Å)58.799, 179.720, 104.300
Angle α, β, γ (deg.)90.00, 94.32, 90.00
Int Tables number4
Space group name H-MP1211

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要素

#1: タンパク質
Nucleophosmin / NPM / Nucleolar phosphoprotein B23 / Nucleolar protein NO38 / Numatrin


分子量: 12673.365 Da / 分子数: 20 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 遺伝子: NPM1, NPM / プラスミド: pET21a / 発現宿主: Escherichia coli BL21(DE3) (大腸菌) / 参照: UniProt: P06748
#2: 化合物
ChemComp-CL / CHLORIDE ION / クロリド


分子量: 35.453 Da / 分子数: 4 / 由来タイプ: 合成 / : Cl
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 235 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折

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試料調製

結晶マシュー密度: 2.16 Å3/Da / 溶媒含有率: 42.97 %
結晶化温度: 290 K / 手法: 蒸気拡散法, シッティングドロップ法 / 詳細: 25% PEG 400, 0.1 M MES, 0.1 M MgCl2 / PH範囲: 7

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: ALBA / ビームライン: XALOC / 波長: 0.97946 Å
検出器タイプ: PSI PILATUS 6M / 検出器: PIXEL / 日付: 2014年12月17日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.97946 Å / 相対比: 1
反射解像度: 2.55→45.53 Å / Num. obs: 69833 / % possible obs: 99.6 % / 冗長度: 6.3 % / Rmerge(I) obs: 0.126 / Net I/σ(I): 9.6
反射 シェル解像度: 2.55→2.61 Å / Rmerge(I) obs: 0.048 / Num. unique all: 4237

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解析

ソフトウェア
名称バージョン分類
PHENIX(1.10_2155: 000)精密化
iMOSFLMデータ削減
Aimlessデータスケーリング
Cootモデル構築
精密化構造決定の手法: 分子置換
開始モデル: 2P1B
解像度: 2.55→45.526 Å / SU ML: 0.31 / 交差検証法: FREE R-VALUE / σ(F): 1.34 / 位相誤差: 23.59 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2291 4137 5.02 %
Rwork0.1636 --
obs0.1668 82338 99.52 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
精密化ステップサイクル: LAST / 解像度: 2.55→45.526 Å
タンパク質核酸リガンド溶媒全体
原子数16213 0 4 235 16452
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00916533
X-RAY DIFFRACTIONf_angle_d1.26522397
X-RAY DIFFRACTIONf_dihedral_angle_d17.5149998
X-RAY DIFFRACTIONf_chiral_restr0.0672580
X-RAY DIFFRACTIONf_plane_restr0.0072904
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.413-2.44040.3311460.27392582X-RAY DIFFRACTION99
2.4404-2.46910.36531500.27052597X-RAY DIFFRACTION99
2.4691-2.49920.3511600.27792545X-RAY DIFFRACTION100
2.4992-2.53090.30121560.26112596X-RAY DIFFRACTION99
2.5309-2.56420.30611400.24432620X-RAY DIFFRACTION99
2.5642-2.59930.30191390.2442550X-RAY DIFFRACTION100
2.5993-2.63640.34291450.22922607X-RAY DIFFRACTION100
2.6364-2.67580.27781320.22232651X-RAY DIFFRACTION99
2.6758-2.71760.31121450.22242524X-RAY DIFFRACTION99
2.7176-2.76210.28611270.22292631X-RAY DIFFRACTION100
2.7621-2.80970.30331430.21642626X-RAY DIFFRACTION100
2.8097-2.86080.23231550.1932569X-RAY DIFFRACTION100
2.8608-2.91580.25831300.19872593X-RAY DIFFRACTION99
2.9158-2.97530.23981460.19032615X-RAY DIFFRACTION100
2.9753-3.040.27771600.18462531X-RAY DIFFRACTION99
3.04-3.11070.26951530.19082638X-RAY DIFFRACTION99
3.1107-3.18850.23511020.18032583X-RAY DIFFRACTION99
3.1885-3.27470.24441400.17422637X-RAY DIFFRACTION99
3.2747-3.3710.25871230.17812600X-RAY DIFFRACTION99
3.371-3.47980.21511410.17012629X-RAY DIFFRACTION99
3.4798-3.60410.25441260.16332604X-RAY DIFFRACTION100
3.6041-3.74830.2011520.14572595X-RAY DIFFRACTION100
3.7483-3.91890.19351310.13672631X-RAY DIFFRACTION100
3.9189-4.12530.20831250.13472613X-RAY DIFFRACTION100
4.1253-4.38360.18611120.12412624X-RAY DIFFRACTION100
4.3836-4.72170.1781290.10742643X-RAY DIFFRACTION100
4.7217-5.19630.16351150.11252644X-RAY DIFFRACTION100
5.1963-5.94680.22541190.15042650X-RAY DIFFRACTION100
5.9468-7.4870.21811560.15252620X-RAY DIFFRACTION100
7.487-45.53430.15891390.14542653X-RAY DIFFRACTION99
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
15.40415.42691.69125.2363.10719.02410.4585-1.201-0.22611.2864-0.46360.38580.8303-0.1354-0.17330.5920.14740.15610.62280.0780.5598-43.9481-31.5593115.4197
27.56421.9636-2.19835.7555-5.83465.8207-0.1332-1.81640.38331.14610.6660.0579-1.26810.0122-0.59830.6270.00870.06950.7541-0.11450.4762-36.4426-20.9403121.1612
36.18942.2775-3.1891.4936-0.57954.5975-0.0965-1.9613-1.54352.78780.40260.07951.98420.6299-0.24091.6547-0.03050.3821.36090.49881.3427-41.6722-38.9526128.1604
44.22591.0524-0.17943.0504-2.59756.17910.0881-0.22290.16970.59290.37680.7308-0.1596-0.019-0.51370.30940.06450.0660.41770.01160.3446-35.8061-23.5759109.8495
53.68392.6306-1.81763.54610.45542.9284-1.568-1.3574-0.09261.22610.453-2.4435-0.39780.25021.02430.47550.18910.00390.6850.07590.4393-27.8371-25.4051117.0309
61.3788-0.56632.18745.4601-3.77074.1279-0.2284-0.1438-0.02130.25220.0111-0.3275-0.0630.20270.19130.4140.12350.07440.45680.02780.2933-27.8898-27.3923111.048
72.5433-1.00040.72263.355-4.44895.60270.1549-0.45620.11950.5506-0.11590.26530.34490.20240.00330.51470.02920.02460.50990.00090.2448-31.8073-26.0992116.9917
86.35021.9018-2.0149.6237-4.50959.85080.2786-0.6992-0.5916-0.2105-0.23510.62440.60130.4335-0.0730.43890.04990.03460.42660.06260.3876-41.4843-33.1705115.0303
98.17783.5874-1.42666.2969-1.4092.13230.516-0.627-0.35570.5462-0.748-0.40710.19790.28310.23010.540.1008-0.03750.6180.06790.2694-23.3941-36.8393115.8844
105.6272-2.79623.59873.1352-4.56946.9771-0.714-0.90190.89950.9747-0.0301-1.5051-0.55870.85520.66170.57630.046-0.13280.97720.02880.6927-10.4073-32.3317111.2764
114.38132.8516-2.16752.73251.60912.00070.4227-0.8704-2.13181.603-0.0611-2.2909-0.22471.48730.92771.2350.0434-0.20011.4070.17651.0278-16.9026-49.0505119.7513
122.79770.3625-1.06818.5763-1.71934.65740.08190.2024-0.10980.5754-0.3997-0.45080.2480.65470.23440.41130.0881-0.04870.5222-0.01010.2231-20.4793-29.2288106.1178
135.3943-0.35070.10724.7103-5.83267.16050.3707-1.2299-0.1891-1.02920.073-0.90051.48671.5569-0.20510.62950.2763-0.06160.70440.15490.3243-13.1439-35.8923102.1116
144.46952.81330.75937.8757-1.25083.6078-0.28460.016-0.98740.00790.2581-0.56691.03810.65540.07350.73740.17810.10120.69130.08610.5055-14.0528-42.188599.0656
155.6512.181-4.71983.3105-0.25945.0710.3582-0.6550.12591.2568-0.01110.5854-0.63230.3187-0.62040.4363-0.05240.06880.3719-0.00190.3787-22.9957-20.518998.1687
167.4353.6039-2.75732.5462-2.91524.31330.5316-0.04660.5426-0.84550.4018-0.06011.50640.5547-0.63740.70020.1702-0.07210.38980.02340.2524-27.1216-32.5695102.7609
172.0242-5.8886.6254.6887-1.01385.686-0.4547-1.4819-1.04510.88070.30920.086-0.2754-0.28770.1530.77850.1652-0.08110.62430.16140.4481-19.7584-44.1408107.1754
185.98711.6886-1.16198.3866-4.685.2039-0.1930.0781-0.14220.01560.093-0.36890.30810.57630.150.41180.0482-0.03790.5146-0.03340.2434-17.3518-33.5921108.6482
194.4166-0.45920.58423.1683-0.6173.6112-0.4068-0.8038-0.8993-0.3479-0.4536-0.82671.3790.60660.83340.94910.20630.07630.4465-0.00180.4608-19.6213-47.413198.8356
206.9491-1.09380.99711.01541.05431.7852-0.490.9623-1.9192-0.49050.6301-0.39242.1925-0.110.17761.630.36570.17720.9413-0.2691.149-16.6372-51.118487.9896
217.6217-1.7611-1.40431.3511-1.7715.80320.2086-0.3914-0.7491-0.88490.04290.92931.61530.5219-0.2920.7760.1201-0.09190.37260.00070.3146-24.1039-44.299194.8785
228.33817.0315-0.80389.2423-3.00934.0237-0.85770.6663-0.6914-2.60610.6986-1.18170.14730.39690.11530.69090.12810.04430.5173-0.00890.2962-21.4657-34.262383.7158
233.25542.88020.37437.5062-0.77793.0622-0.25350.1076-0.4324-1.03680.31790.04540.4503-0.2804-0.0050.58460.04170.00340.4342-0.0220.3631-28.6812-38.029286.7369
243.68573.8578-0.89958.9599-1.08164.051-0.07140.3699-0.2585-0.94460.01410.09231.01160.28110.15450.77580.11960.03260.4503-0.04940.3472-22.9784-42.542585.7188
253.8585-0.39081.00514.2707-2.85144.69810.3437-0.6787-0.5501-0.6937-0.8234-0.33111.96441.76730.43151.02930.34110.04710.5480.01510.3562-21.2262-46.68196.8389
269.1998-4.76273.95198.3816-5.68166.55520.058-0.1429-0.8168-1.0069-0.03140.92220.80720.1727-0.21490.8365-0.0879-0.02370.3463-0.03180.5101-35.9362-47.061385.8573
279.53144.0801-3.26822.8461-2.36592.2664-0.87091.4304-0.4279-0.41540.56750.0182-0.6104-0.32260.31690.9145-0.0189-0.25180.5706-0.09540.5988-43.8435-38.895777.2208
288.95166.7901-4.52048.2413-1.18586.6165-0.87370.073-3.46070.2968-0.4861-0.86910.1902-0.97611.19851.3884-0.0375-0.00220.7026-0.05981.4741-47.6437-56.530285.8662
296.43135.5071-0.12037.18221.88651.00790.0367-0.4813-0.4034-0.8293-0.50210.25471.34540.37190.43850.7797-0.0517-0.070.39660.06640.3921-38.106-41.329189.4207
304.434-3.8961-6.40428.87765.61699.53130.08970.85320.2498-0.9167-0.3370.052-0.6468-0.67110.20970.723-0.0904-0.16430.49560.05090.3849-34.7012-24.093878.6778
317.34557.1617-6.27346.4608-6.56046.5357-1.00232.08471.1468-1.29331.73372.15381.7335-1.5041-0.77550.7328-0.2656-0.15930.61380.15770.5646-47.6593-34.461785.8377
324.22566.4159-3.47249.6923-4.89139.6122-0.0206-0.42260.451-0.18560.13541.06590.4002-0.7817-0.1780.5579-0.0159-0.00530.47880.09950.5174-52.017-35.816491.0392
334.39093.2318-3.3195.6266-5.43755.56870.07590.0363-0.09710.7918-0.1527-0.2134-0.13640.09790.05070.4931-0.02-0.05320.2848-0.03030.2855-33.679-28.306789.5043
345.44367.33115.7689.96597.93556.30390.2231-1.238-1.31430.8250.3760.26161.97670.1128-0.41080.6952-0.0616-0.1780.66330.20140.6704-46.0221-44.353891.7017
354.3011.08061.0442.3805-2.22743.1114-0.290.17840.4227-1.12740.47270.87770.3964-0.79-0.20310.6734-0.2128-0.15550.55080.0460.5139-44.2753-32.620680.6874
367.8431.2383-0.23741.2974-2.52745.23660.206-0.6093-0.5067-0.6979-0.908-0.03851.02640.16720.52630.8783-0.0417-0.06280.3205-0.00670.3904-37.1718-44.977987.5188
374.98570.6649-3.39291.3792-1.41313.236-0.217-0.1144-0.2903-0.18040.84421.54970.7967-0.5739-0.50680.5773-0.1226-0.15550.71580.13430.4423-51.7973-37.96496.8289
382.9763.2924-3.08985.4717-6.48568.23220.0376-0.28220.07890.0691-0.1771.108-0.3889-0.2670.17150.4671-0.0119-0.02590.7731-0.09281.0353-56.8219-25.2106100.3688
395.15550.07910.40566.3859-1.27743.94430.4218-0.4531-1.11840.64280.01061.2990.4243-0.3889-0.40890.5359-0.0984-0.01750.61420.14650.7557-53.0593-38.5594103.4947
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945.60063.2413-2.42013.30410.32393.10040.1664-0.06720.378-0.75171.14281.11410.0749-1.621-1.70240.35290.02380.01120.39380.06730.5471-42.28836.663378.6936
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994.30473.9382-2.31194.4236-3.85733.85590.37370.03370.86481.0977-0.28420.7801-0.950.23120.00340.5121-0.07790.05310.47940.03760.5425-33.551617.826485.489
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1024.54961.5704-6.32070.5133-2.15658.59852.3786-0.41191.47561.16120.1743-0.3234-2.71480.3898-1.8421.452-0.24020.06260.8658-0.2571.3085-18.60530.73796.6845
1031.81241.1022-1.94578.6293-5.00785.91290.17680.09210.2861-0.0959-0.3370.2044-0.20040.49140.11560.3733-0.1173-0.02260.5502-0.03550.3269-20.477513.149492.3618
1042.86823.3535-0.11559.0737-5.955.659-0.2743-0.6919-0.16441.13730.35911.0991-0.4879-0.3212-0.1840.5047-0.04960.07110.5812-0.09540.2975-28.54475.2664100.5856
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1083.97591.47560.19926.5676-0.96262.4221-0.0766-0.28480.32920.45410.04230.213-0.2535-0.22560.06740.5314-0.04160.02050.4214-0.10370.3344-22.971512.139598.4981
1096.13140.8073-0.43826.3976-5.75855.1158-0.2239-0.53140.32110.9061-0.2134-0.3737-1.25681.18930.49210.4845-0.1407-0.0410.7814-0.17750.3684-3.51616.834180.0505
1107.83355.6998-2.21414.5252-0.52043.61020.255-0.9194-0.5871.2206-0.4518-0.53090.01990.99140.34080.5943-0.039-0.10071.18120.22620.4990.07821.442993.1688
1113.5676-1.97253.93354.5532-0.78424.8728-0.2213-0.43940.3274-1.2179-0.17140.0075-0.01430.76980.76841.3332-0.56250.50092.0158-0.38991.39134.463118.065883.8536
1123.98442.0542-1.90642.8295-2.56086.93950.4405-0.1484-0.04080.7722-0.4574-0.3077-0.56580.69770.01930.3415-0.0636-0.00860.4998-0.03970.2587-9.68790.764787.5767
1133.61282.5062-3.3843.0249-4.76347.51270.6438-0.56950.63731.8535-0.5754-0.9518-0.37651.4702-0.0130.3994-0.1418-0.08970.8004-0.02850.4962-8.70215.623996.3
1147.29953.20081.06162.7027-1.57484.7761-0.1196-0.13971.1730.95910.03560.5833-0.98360.5536-0.01060.6751-0.1263-0.04940.607-0.01250.4431-11.296812.011897.5788
1156.11094.4523-4.2924.076-2.12974.05530.21860.77440.34630.08510.46820.1530.40920.2331-0.60390.4439-0.023-0.0760.46050.02290.3341-18.549-9.096790.2767
1169.10886.96691.64784.9907-0.16616.3761-0.23370.61490.5545-0.10650.12010.4963-0.71640.6155-0.00820.2767-0.0560.0530.6758-0.0170.3159-11.61039.430686.6812
1170.41250.3212-0.63445.7084-3.17617.14370.2335-0.1349-0.04630.3297-0.2284-0.1677-0.42680.94010.0750.1962-0.10710.00230.6115-0.06320.3787-5.81894.29288.4166
1186.2882-3.53740.23853.008-2.91966.7466-0.21010.67510.5344-0.4288-0.1202-0.5108-0.28670.63020.12630.4166-0.1504-0.07570.6642-0.01090.3304-16.44854.712163.7817
1195.63234.6705-3.79545.741-6.79499.830.02380.8958-1.0421-1.7057-0.1367-1.16470.8250.55260.1730.5495-0.00660.02570.7477-0.25310.5573-7.3088-8.438766.4375
1208.28570.98663.40374.89732.75532.5572-0.15770.13542.92871.0062-1.61650.57150.76280.10011.50211.1059-0.22010.00691.7208-0.18471.3646-4.31179.271958.2013
1211.93881.1759-0.32218.7256-6.23796.60660.08150.1649-0.3232-0.4659-0.3729-0.35140.35530.70220.27150.31120.0179-0.01750.5083-0.05820.2913-15.8721-4.341272.6448
1224.09943.0628-4.71663.6064-4.30775.47910.41650.1536-0.64080.3889-0.1273-1.3471-0.2141.0049-0.0680.4092-0.0276-0.01240.7327-0.03870.4349-6.052-4.366575.3729
1234.72311.23110.19395.6343-1.47583.6279-0.0371-0.2557-0.11670.04420.0138-0.4822-0.34791.0007-0.05980.3088-0.07270.01190.5858-0.08250.2351-10.682-2.403478.9277
1247.1131-3.0399-6.83556.66725.09377.40491.00170.13760.2917-1.2994-0.7251-0.112-0.9970.3643-0.12350.3157-0.09560.06020.68180.02430.3669-7.85116.388570.9426
1254.75850.07441.17793.0865-3.99445.9633-0.14710.4307-0.104-0.36760.0551-0.35670.14510.76280.08260.3902-0.02980.05870.4978-0.09470.2297-12.072-2.69969.4944
1265.5127-3.34261.85024.2330.47646.0785-0.15930.11320.5724-0.53460.49510.5053-0.44360.1874-0.19780.3291-0.051-0.02790.46310.01510.2991-34.443311.66668.4888
1274.9786-0.61351.08317.8461-1.36343.9681-0.11870.52010.3986-1.1611-0.0160.0767-0.0492-0.15320.09240.3984-0.0317-0.04850.4246-0.02360.3641-33.53746.094263.1768
1285.54713.0701-0.81097.726-2.84684.656-0.43310.3358-0.027-0.93220.39050.38480.851-0.20030.13770.3872-0.0968-0.09450.3369-0.01490.2507-31.3295-8.037769.8873
1292.77591.675-0.93164.303-1.75333.0638-0.19450.4110.0775-0.48820.197-00.1460.33720.04290.3088-0.0524-0.07820.50710.02360.2818-24.5817-2.822870.0909
1305.77632.1939-1.20669.8063-4.75537.33740.07770.25650.0743-0.84470.050.18210.34850.2476-0.13710.2703-0.0387-0.06240.3625-0.00310.2488-29.6443-1.285265.0918
1316.84841.5281-1.63933.1977-5.50719.46820.1685-0.19870.5705-0.4116-0.0450.7901-0.28690.1657-0.09630.343-0.0602-0.04110.35560.00760.4134-32.97629.894768.5893
1325.21455.4946-2.80029.30060.56863.59570.5192-0.48541.11720.3391-0.40170.6142-0.51870.2409-0.07790.32410.01740.0090.37120.05220.39449.569215.63641.6157
1337.01873.94741.49454.5673-3.29757.788-0.233-1.11731.50810.22780.3772-0.5663-0.6497-0.4761-0.330.5353-0.03170.30160.3881-0.04710.7578-2.975612.660647.3226
1345.69092.5944-1.64045.3462-0.62015.2712-0.69650.45412.1641.64650.1179-0.2528-1.2752-0.66240.60131.1140.20380.06970.7202-0.02171.5863.240128.973439.0402
1359.04025.7061-2.78848.2305-2.71246.9975-0.15350.45160.6345-0.5958-0.3305-0.3642-0.2950.40990.2620.2485-0.0431-0.01810.37870.02390.27126.300212.429136.7839
1365.30114.0988-0.80977.4408-5.07719.07460.1011-0.2972-0.40750.76690.76191.3078-0.7993-1.047-0.96820.34020.06840.13290.3965-0.05820.3187-3.9952.744242.6094
1374.52530.7224-0.79917.5855-4.85036.31030.58711.04120.6381-0.388-0.14480.7247-0.6744-0.4376-0.39410.4530.12270.05740.54860.12350.3842-7.297711.679431.5835
1384.67895.0815-4.06919.7342-4.10193.3591-0.58180.4498-0.201-0.52680.5809-0.45860.252-0.52610.02160.2747-0.0148-0.00750.3620.0160.33364.3311-2.711738.4915
1398.7696-6.3774-4.34664.94594.27297.97680.76550.55530.9280.2165-0.18990.3539-0.67550.4042-0.57570.42330.02690.05030.46580.1790.48861.592816.912332.9307
1407.78773.5547-1.65947.3628-4.54016.2776-0.04290.0910.22350.49060.15780.9767-0.1693-1.1062-0.18430.37260.04630.17470.3793-0.02250.3803-5.24636.757443.6852
1419.16064.8974-4.8152.6474-2.92022.8675-0.02910.33860.52290.26270.0305-0.2784-0.409-0.01450.15310.4456-0.10680.04850.29990.00630.45338.591615.26138.8954
1426.59755.27513.46164.87931.18387.4386-0.18730.3781.10880.15020.52981.976-0.74410.0824-0.05770.31350.1170.11340.36450.13780.5441-4.707712.79426.2638
1435.57595.0861-2.72116.2176-0.84123.8049-0.0560.77580.42130.56391.22080.59-0.8903-1.5989-1.17620.37760.0958-0.03470.59770.0960.5727-13.8093.235821.3896
1442.01547.57615.54956.38465.47235.4933-2.01030.92033.0936-1.2375-0.17362.3393-2.39020.53121.88031.64840.2783-0.27831.09680.17531.2598-8.012320.199313.4608
1457.49181.79351.21288.54820.55210.518-0.0349-0.10770.4605-0.6918-0.3153-0.3406-0.32110.79880.41830.40130.00730.09410.41290.01710.3572-0.91618.193223.3012
1465.64942.8655-3.08749.3044-2.48342.20760.14690.30750.0674-0.27570.14270.26470.6306-0.6561-0.60680.1618-0.0016-0.08990.50480.03210.3904-7.5367-5.516424.0397
1473.15912.131-1.61052.27480.14042.21290.1440.54690.0881-0.74110.07730.08160.66710.446-0.10360.31320.00170.01070.49680.08820.429-1.0054-0.733911.8767
1483.8073.2569-1.82793.528-3.04843.95870.1448-0.3226-0.19590.05110.0011-0.53960.0676-0.1925-0.1610.22170.0273-0.02210.31660.05180.3320.5317-5.185930.9809
1494.7548-5.74924.39716.9275-5.63474.2275-0.36730.47910.1401-0.05870.80870.4332-0.81090.4842-0.11020.34680.0280.08090.450.08860.3813-0.1998.743816.0274
1504.30633.1999-0.15468.0725-3.29665.1426-0.01860.38170.1047-0.04490.30710.6628-0.296-0.3377-0.26520.21470.03840.00960.47050.05780.3444-6.30944.52622.9372
1513.965-3.77772.6786.67070.27216.39120.17130.04040.4604-0.5875-0.51250.0838-0.44210.26070.2110.2792-0.05920.04810.4680.04760.32645.00753.375510.6055
1522.19335.6054-6.07044.7174-1.29575.19-0.98281.3531-0.2072-1.11271.30640.35680.8125-0.7092-0.42790.6405-0.0093-0.11120.6581-0.03540.43017.962-11.76637.2619
1536.2676-1.47790.80114.17784.93687.09461.1342-0.071-0.0859-0.2689-0.632-1.0636-1.14820.2218-0.31740.9528-0.2303-0.05851.28930.23920.74613.16455.7779-0.361
1542.08310.491-0.87818.5365-4.40284.7179-0.02590.07870.2057-0.3741-0.03790.35560.39020.2720.12790.1980.016-0.01360.41730.00450.27356.267-8.476918.3967
1554.92265.6668-5.55675.9323-6.03797.0471-1.06281.1725-1.8905-1.2632-0.2563-1.4030.57420.79621.1170.4258-0.04690.07530.7138-0.01510.41915.9562-10.921313.9809
1567.11445.9707-5.13829.7522-3.44397.5188-0.5351-0.2648-0.2227-0.75470.1633-0.87030.13071.21810.36750.2695-0.05390.06080.5415-0.02560.357521.9238-7.584714.457
1577.68046.5311-2.64994.9117-0.08117.51510.31120.07440.33760.9401-0.3670.7993-0.191-0.0544-0.10660.16190.00770.00720.2887-0.02190.31186.3937-9.698126.2517
1583.1573-3.5908-3.99429.91689.47569.24230.6261-0.68710.0509-1.2549-0.8169-0.0529-1.92140.4860.39850.3629-0.02510.06890.56090.11550.377916.46420.691311.6026
1592.6494-0.679-0.89352.7581-2.03544.58980.0830.4732-0.1603-0.2628-0.11260.10890.06370.13380.03470.2524-0.0207-0.01910.44520.00950.2368.6551-7.086113.0283
1607.7817-3.78931.08262.1995-1.52187.49530.24130.35110.493-0.6199-0.15770.3748-0.36440.29830.07050.3039-0.03490.03520.4571-0.01660.303624.1412-0.55716.2807
1619.12837.0055-6.24515.4576-4.61599.6386-0.9695-0.1887-1.39010.62710.9932-0.55050.30930.1809-0.00540.38280.14340.03430.52650.08250.576831.7955-11.602224.7678
1621.6279-0.2889-3.14165.0479-1.08069.2353-0.78861.85650.8312-0.75160.6315-3.323-0.26681.4459-0.34560.913-0.27940.18221.166-0.00261.247137.35434.77316.0395
1633.3815-1.7443-2.23282.2407-1.63167.21940.22010.11870.43670.0208-0.15510.0362-0.67410.3894-0.07560.2143-0.0467-0.0030.41240.04330.275123.1232-0.745922.9883
1646.8116-0.1042-4.50562.0679-0.18323.0034-0.5309-0.5952-1.4269-0.6289-0.630.2205-0.41670.34691.27120.38250.0402-0.03620.4281-0.01350.5718.4802-20.612131.6654
1654.71542.895-2.82252.7403-3.81876.26020.9351-0.8837-0.79731.718-0.7981-1.8191-0.67440.9298-0.10120.2575-0.07-0.01440.56560.06670.507328.7439-5.788432.9957
1667.29613.7195-1.00024.7535-3.99444.2440.4828-1.18530.89730.6826-0.61310.1192-0.45750.38430.22780.2961-0.00230.03060.3795-0.10380.467730.05450.387835.7031
1673.45563.1481-3.03432.9222-2.84712.67490.45250.37691.22340.41580.29050.2073-0.0807-0.0555-0.44490.2994-0.03690.01980.32240.01160.398412.4166-15.268333.3041
1684.69492.0375-0.96327.0132-1.94132.97680.1565-0.38870.03140.2474-0.3159-0.3335-0.08620.35820.12910.1997-0.0327-0.00970.39360.01950.189725.4203-5.302728.8401
1699.22494.2493-2.18284.4602-5.64138.2672-0.29320.42720.3065-0.47970.1284-0.03720.01970.44450.01790.24660.05110.05480.3870.01710.217124.3001-0.77318.8286
1704.90422.799-3.78665.51730.22564.46160.1383-0.0120.46470.0796-0.2052-0.3829-1.34341.01480.5250.3923-0.1371-0.03310.4690.08640.426627.47967.525434.6485
1719.57056.1329-6.38615.7015-7.4649.61250.20460.3111-0.28890.4434-0.1563-0.7553-0.4481-0.0798-0.10.4185-0.0427-0.07110.5586-0.04110.352225.24743.567849.4493
1721.18122.35280.91734.24511.67610.7125-0.1649-0.01350.73172.46-0.023-3.748-3.06462.17081.05351.0925-0.2477-0.19380.9918-0.11131.271931.352419.859639.4355
1734.11572.2317-2.60714.9095-2.72155.07770.06630.28930.5244-0.25580.3656-0.1063-0.4710.0409-0.37570.2968-0.01060.04840.36450.02320.291920.63325.45536.8108
1742.12790.3048-2.79681.9688-1.42846.68620.4733-0.8091-1.1306-0.1493-0.1720.373-0.05420.4303-0.3630.4724-0.0197-0.05360.35680.08490.368616.0994-11.468147.8507
1754.72783.6325-2.27464.0687-4.71926.6342-0.1302-0.10890.96591.65180.74920.5209-0.6561-0.0447-0.44650.3614-0.0691-0.02770.3719-0.00370.397315.28896.676847.6579
1762.80271.73291.06543.2138-1.62972.8647-0.767-0.81742.73530.35030.01590.6721-2.8942-0.83330.3080.84810.0258-0.02970.5533-0.08350.702611.505322.881346.2318
1771.32360.65330.79953.87415.91957.7238-0.0807-0.2268-0.0974-0.38560.1685-0.1442-0.1782-0.0152-0.08980.2845-0.06020.03390.27330.03540.271911.7344-0.792944.2568
1786.22724.6492-2.56495.5301-4.35594.0423-0.38060.4620.55610.46941.30560.4376-0.434-0.091-0.80070.3455-0.01020.04020.38110.02470.354614.37140.787134.7328
1799.13528.35265.41577.68064.98116.579-0.38290.97580.2417-0.26980.28210.77-0.96941.3152-0.00590.40190.03120.01440.35030.01790.383219.220313.598839.2552
1807.10284.3417-2.6963.3723-3.72076.65050.7121-0.9864-0.11261.1238-0.45830.611-0.06330.1658-0.24870.3115-0.129-0.0170.36120.05970.302318.33561.2949.6934
1816.62297.5255-2.22689.5382-3.18016.49740.20440.07740.41140.30080.44750.8454-0.45660.0807-0.45460.2815-0.02270.01460.33280.01850.412824.81566.193736.223
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 14 through 23 )
2X-RAY DIFFRACTION2chain 'A' and (resid 24 through 31 )
3X-RAY DIFFRACTION3chain 'A' and (resid 32 through 39 )
4X-RAY DIFFRACTION4chain 'A' and (resid 40 through 57 )
5X-RAY DIFFRACTION5chain 'A' and (resid 58 through 65 )
6X-RAY DIFFRACTION6chain 'A' and (resid 66 through 91 )
7X-RAY DIFFRACTION7chain 'A' and (resid 92 through 108 )
8X-RAY DIFFRACTION8chain 'A' and (resid 109 through 119 )
9X-RAY DIFFRACTION9chain 'B' and (resid 14 through 23 )
10X-RAY DIFFRACTION10chain 'B' and (resid 24 through 31 )
11X-RAY DIFFRACTION11chain 'B' and (resid 32 through 39 )
12X-RAY DIFFRACTION12chain 'B' and (resid 40 through 57 )
13X-RAY DIFFRACTION13chain 'B' and (resid 58 through 65 )
14X-RAY DIFFRACTION14chain 'B' and (resid 66 through 79 )
15X-RAY DIFFRACTION15chain 'B' and (resid 80 through 85 )
16X-RAY DIFFRACTION16chain 'B' and (resid 86 through 91 )
17X-RAY DIFFRACTION17chain 'B' and (resid 92 through 97 )
18X-RAY DIFFRACTION18chain 'B' and (resid 98 through 118 )
19X-RAY DIFFRACTION19chain 'C' and (resid 13 through 23 )
20X-RAY DIFFRACTION20chain 'C' and (resid 24 through 38 )
21X-RAY DIFFRACTION21chain 'C' and (resid 39 through 49 )
22X-RAY DIFFRACTION22chain 'C' and (resid 50 through 65 )
23X-RAY DIFFRACTION23chain 'C' and (resid 66 through 91 )
24X-RAY DIFFRACTION24chain 'C' and (resid 92 through 108 )
25X-RAY DIFFRACTION25chain 'C' and (resid 109 through 119 )
26X-RAY DIFFRACTION26chain 'D' and (resid 14 through 23 )
27X-RAY DIFFRACTION27chain 'D' and (resid 24 through 31 )
28X-RAY DIFFRACTION28chain 'D' and (resid 32 through 39 )
29X-RAY DIFFRACTION29chain 'D' and (resid 40 through 49 )
30X-RAY DIFFRACTION30chain 'D' and (resid 50 through 57 )
31X-RAY DIFFRACTION31chain 'D' and (resid 58 through 65 )
32X-RAY DIFFRACTION32chain 'D' and (resid 66 through 79 )
33X-RAY DIFFRACTION33chain 'D' and (resid 80 through 91 )
34X-RAY DIFFRACTION34chain 'D' and (resid 92 through 97 )
35X-RAY DIFFRACTION35chain 'D' and (resid 98 through 108 )
36X-RAY DIFFRACTION36chain 'D' and (resid 109 through 118 )
37X-RAY DIFFRACTION37chain 'E' and (resid 14 through 23 )
38X-RAY DIFFRACTION38chain 'E' and (resid 24 through 31 )
39X-RAY DIFFRACTION39chain 'E' and (resid 32 through 49 )
40X-RAY DIFFRACTION40chain 'E' and (resid 50 through 65 )
41X-RAY DIFFRACTION41chain 'E' and (resid 66 through 91 )
42X-RAY DIFFRACTION42chain 'E' and (resid 92 through 97 )
43X-RAY DIFFRACTION43chain 'E' and (resid 98 through 108 )
44X-RAY DIFFRACTION44chain 'E' and (resid 109 through 119 )
45X-RAY DIFFRACTION45chain 'F' and (resid 13 through 23 )
46X-RAY DIFFRACTION46chain 'F' and (resid 24 through 31 )
47X-RAY DIFFRACTION47chain 'F' and (resid 32 through 49 )
48X-RAY DIFFRACTION48chain 'F' and (resid 50 through 65 )
49X-RAY DIFFRACTION49chain 'F' and (resid 66 through 79 )
50X-RAY DIFFRACTION50chain 'F' and (resid 80 through 91 )
51X-RAY DIFFRACTION51chain 'F' and (resid 92 through 97 )
52X-RAY DIFFRACTION52chain 'F' and (resid 98 through 108 )
53X-RAY DIFFRACTION53chain 'F' and (resid 109 through 119 )
54X-RAY DIFFRACTION54chain 'G' and (resid 14 through 23 )
55X-RAY DIFFRACTION55chain 'G' and (resid 24 through 31 )
56X-RAY DIFFRACTION56chain 'G' and (resid 32 through 39 )
57X-RAY DIFFRACTION57chain 'G' and (resid 40 through 49 )
58X-RAY DIFFRACTION58chain 'G' and (resid 50 through 65 )
59X-RAY DIFFRACTION59chain 'G' and (resid 66 through 70 )
60X-RAY DIFFRACTION60chain 'G' and (resid 71 through 85 )
61X-RAY DIFFRACTION61chain 'G' and (resid 86 through 97 )
62X-RAY DIFFRACTION62chain 'G' and (resid 98 through 108 )
63X-RAY DIFFRACTION63chain 'G' and (resid 109 through 119 )
64X-RAY DIFFRACTION64chain 'H' and (resid 13 through 23 )
65X-RAY DIFFRACTION65chain 'H' and (resid 24 through 31 )
66X-RAY DIFFRACTION66chain 'H' and (resid 32 through 39 )
67X-RAY DIFFRACTION67chain 'H' and (resid 40 through 57 )
68X-RAY DIFFRACTION68chain 'H' and (resid 58 through 65 )
69X-RAY DIFFRACTION69chain 'H' and (resid 66 through 70 )
70X-RAY DIFFRACTION70chain 'H' and (resid 71 through 85 )
71X-RAY DIFFRACTION71chain 'H' and (resid 86 through 97 )
72X-RAY DIFFRACTION72chain 'H' and (resid 98 through 119 )
73X-RAY DIFFRACTION73chain 'I' and (resid 13 through 23 )
74X-RAY DIFFRACTION74chain 'I' and (resid 24 through 38 )
75X-RAY DIFFRACTION75chain 'I' and (resid 39 through 49 )
76X-RAY DIFFRACTION76chain 'I' and (resid 50 through 65 )
77X-RAY DIFFRACTION77chain 'I' and (resid 66 through 79 )
78X-RAY DIFFRACTION78chain 'I' and (resid 80 through 91 )
79X-RAY DIFFRACTION79chain 'I' and (resid 92 through 97 )
80X-RAY DIFFRACTION80chain 'I' and (resid 98 through 119 )
81X-RAY DIFFRACTION81chain 'J' and (resid 14 through 23 )
82X-RAY DIFFRACTION82chain 'J' and (resid 24 through 31 )
83X-RAY DIFFRACTION83chain 'J' and (resid 32 through 38 )
84X-RAY DIFFRACTION84chain 'J' and (resid 39 through 49 )
85X-RAY DIFFRACTION85chain 'J' and (resid 50 through 65 )
86X-RAY DIFFRACTION86chain 'J' and (resid 66 through 70 )
87X-RAY DIFFRACTION87chain 'J' and (resid 71 through 91 )
88X-RAY DIFFRACTION88chain 'J' and (resid 92 through 108 )
89X-RAY DIFFRACTION89chain 'J' and (resid 109 through 120 )
90X-RAY DIFFRACTION90chain 'a' and (resid 14 through 23 )
91X-RAY DIFFRACTION91chain 'a' and (resid 24 through 31 )
92X-RAY DIFFRACTION92chain 'a' and (resid 32 through 39 )
93X-RAY DIFFRACTION93chain 'a' and (resid 40 through 57 )
94X-RAY DIFFRACTION94chain 'a' and (resid 58 through 65 )
95X-RAY DIFFRACTION95chain 'a' and (resid 66 through 70 )
96X-RAY DIFFRACTION96chain 'a' and (resid 71 through 85 )
97X-RAY DIFFRACTION97chain 'a' and (resid 86 through 97 )
98X-RAY DIFFRACTION98chain 'a' and (resid 98 through 108 )
99X-RAY DIFFRACTION99chain 'a' and (resid 109 through 119 )
100X-RAY DIFFRACTION100chain 'b' and (resid 14 through 23 )
101X-RAY DIFFRACTION101chain 'b' and (resid 24 through 31 )
102X-RAY DIFFRACTION102chain 'b' and (resid 32 through 39 )
103X-RAY DIFFRACTION103chain 'b' and (resid 40 through 49 )
104X-RAY DIFFRACTION104chain 'b' and (resid 50 through 65 )
105X-RAY DIFFRACTION105chain 'b' and (resid 66 through 70 )
106X-RAY DIFFRACTION106chain 'b' and (resid 71 through 85 )
107X-RAY DIFFRACTION107chain 'b' and (resid 86 through 97 )
108X-RAY DIFFRACTION108chain 'b' and (resid 98 through 118 )
109X-RAY DIFFRACTION109chain 'c' and (resid 14 through 23 )
110X-RAY DIFFRACTION110chain 'c' and (resid 24 through 31 )
111X-RAY DIFFRACTION111chain 'c' and (resid 32 through 38 )
112X-RAY DIFFRACTION112chain 'c' and (resid 39 through 57 )
113X-RAY DIFFRACTION113chain 'c' and (resid 58 through 65 )
114X-RAY DIFFRACTION114chain 'c' and (resid 66 through 79 )
115X-RAY DIFFRACTION115chain 'c' and (resid 80 through 85 )
116X-RAY DIFFRACTION116chain 'c' and (resid 86 through 97 )
117X-RAY DIFFRACTION117chain 'c' and (resid 98 through 119 )
118X-RAY DIFFRACTION118chain 'd' and (resid 13 through 23 )
119X-RAY DIFFRACTION119chain 'd' and (resid 24 through 31 )
120X-RAY DIFFRACTION120chain 'd' and (resid 32 through 38 )
121X-RAY DIFFRACTION121chain 'd' and (resid 39 through 57 )
122X-RAY DIFFRACTION122chain 'd' and (resid 58 through 65 )
123X-RAY DIFFRACTION123chain 'd' and (resid 66 through 91 )
124X-RAY DIFFRACTION124chain 'd' and (resid 92 through 97 )
125X-RAY DIFFRACTION125chain 'd' and (resid 98 through 119 )
126X-RAY DIFFRACTION126chain 'e' and (resid 13 through 23 )
127X-RAY DIFFRACTION127chain 'e' and (resid 24 through 49 )
128X-RAY DIFFRACTION128chain 'e' and (resid 50 through 65 )
129X-RAY DIFFRACTION129chain 'e' and (resid 66 through 91 )
130X-RAY DIFFRACTION130chain 'e' and (resid 92 through 108 )
131X-RAY DIFFRACTION131chain 'e' and (resid 109 through 119 )
132X-RAY DIFFRACTION132chain 'f' and (resid 14 through 23 )
133X-RAY DIFFRACTION133chain 'f' and (resid 24 through 31 )
134X-RAY DIFFRACTION134chain 'f' and (resid 32 through 38 )
135X-RAY DIFFRACTION135chain 'f' and (resid 39 through 49 )
136X-RAY DIFFRACTION136chain 'f' and (resid 50 through 65 )
137X-RAY DIFFRACTION137chain 'f' and (resid 66 through 79 )
138X-RAY DIFFRACTION138chain 'f' and (resid 80 through 91 )
139X-RAY DIFFRACTION139chain 'f' and (resid 92 through 97 )
140X-RAY DIFFRACTION140chain 'f' and (resid 98 through 108 )
141X-RAY DIFFRACTION141chain 'f' and (resid 109 through 119 )
142X-RAY DIFFRACTION142chain 'g' and (resid 14 through 23 )
143X-RAY DIFFRACTION143chain 'g' and (resid 24 through 31 )
144X-RAY DIFFRACTION144chain 'g' and (resid 32 through 38 )
145X-RAY DIFFRACTION145chain 'g' and (resid 39 through 49 )
146X-RAY DIFFRACTION146chain 'g' and (resid 50 through 65 )
147X-RAY DIFFRACTION147chain 'g' and (resid 66 through 79 )
148X-RAY DIFFRACTION148chain 'g' and (resid 80 through 91 )
149X-RAY DIFFRACTION149chain 'g' and (resid 92 through 97 )
150X-RAY DIFFRACTION150chain 'g' and (resid 98 through 119 )
151X-RAY DIFFRACTION151chain 'h' and (resid 13 through 23 )
152X-RAY DIFFRACTION152chain 'h' and (resid 24 through 31 )
153X-RAY DIFFRACTION153chain 'h' and (resid 32 through 39 )
154X-RAY DIFFRACTION154chain 'h' and (resid 40 through 57 )
155X-RAY DIFFRACTION155chain 'h' and (resid 58 through 65 )
156X-RAY DIFFRACTION156chain 'h' and (resid 66 through 79 )
157X-RAY DIFFRACTION157chain 'h' and (resid 80 through 91 )
158X-RAY DIFFRACTION158chain 'h' and (resid 92 through 97 )
159X-RAY DIFFRACTION159chain 'h' and (resid 98 through 118 )
160X-RAY DIFFRACTION160chain 'i' and (resid 13 through 23 )
161X-RAY DIFFRACTION161chain 'i' and (resid 24 through 31 )
162X-RAY DIFFRACTION162chain 'i' and (resid 32 through 38 )
163X-RAY DIFFRACTION163chain 'i' and (resid 39 through 49 )
164X-RAY DIFFRACTION164chain 'i' and (resid 50 through 57 )
165X-RAY DIFFRACTION165chain 'i' and (resid 58 through 65 )
166X-RAY DIFFRACTION166chain 'i' and (resid 66 through 79 )
167X-RAY DIFFRACTION167chain 'i' and (resid 80 through 85 )
168X-RAY DIFFRACTION168chain 'i' and (resid 86 through 108 )
169X-RAY DIFFRACTION169chain 'i' and (resid 109 through 119 )
170X-RAY DIFFRACTION170chain 'j' and (resid 13 through 23 )
171X-RAY DIFFRACTION171chain 'j' and (resid 24 through 31 )
172X-RAY DIFFRACTION172chain 'j' and (resid 32 through 39 )
173X-RAY DIFFRACTION173chain 'j' and (resid 40 through 49 )
174X-RAY DIFFRACTION174chain 'j' and (resid 50 through 57 )
175X-RAY DIFFRACTION175chain 'j' and (resid 58 through 65 )
176X-RAY DIFFRACTION176chain 'j' and (resid 66 through 70 )
177X-RAY DIFFRACTION177chain 'j' and (resid 71 through 85 )
178X-RAY DIFFRACTION178chain 'j' and (resid 86 through 91 )
179X-RAY DIFFRACTION179chain 'j' and (resid 92 through 97 )
180X-RAY DIFFRACTION180chain 'j' and (resid 98 through 108 )
181X-RAY DIFFRACTION181chain 'j' and (resid 109 through 118 )

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る