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- PDB-5ds0: Crystal structure of TET aminopeptidase from marine sediment arch... -

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Basic information

Entry
Database: PDB / ID: 5ds0
TitleCrystal structure of TET aminopeptidase from marine sediment archaeon Thaumarchaeota archaeon SCGC AB-539-E09
ComponentsPeptidase M42
KeywordsHYDROLASE / single cell genomics / M42 peptidase family / Structural Genomics / PSI-Biology / Midwest Center for Structural Genomics / MCSG
Function / homology
Function and homology information


aminopeptidase activity / metal ion binding
Similarity search - Function
Peptidase M42, domain 2 / Peptidase M42, domain 2 / M42 glutamyl aminopeptidase / Peptidase M42 / Zn peptidases / Elongation Factor Tu (Ef-tu); domain 3 / Aminopeptidase / Beta Barrel / 3-Layer(aba) Sandwich / Mainly Beta / Alpha Beta
Similarity search - Domain/homology
Biological speciesThaumarchaeota archaeon SCGC AB-539-E09 (archaea)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å
AuthorsMichalska, K. / Chhor, G. / Mootz, J. / Endres, M. / Jedrzejczak, R. / Babnigg, G. / Steen, A. / Lloyd, K. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG)
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM094585 United States
CitationJournal: To Be Published
Title: Crystal structure of TET aminopeptidase from marine sediment archaeon Thaumarchaeota archaeon SCGC AB-539-E09
Authors: Michalska, K. / Chhor, G. / Mootz, J. / Endres, M. / Jedrzejczak, R. / Babnigg, G. / Steen, A. / Lloyd, K. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG)
History
DepositionSep 16, 2015Deposition site: RCSB / Processing site: RCSB
Revision 1.0Oct 14, 2015Provider: repository / Type: Initial release
Revision 1.1Sep 27, 2017Group: Author supporting evidence / Derived calculations / Category: pdbx_audit_support / pdbx_struct_oper_list
Item: _pdbx_audit_support.funding_organization / _pdbx_struct_oper_list.symmetry_operation
Revision 1.2Nov 20, 2019Group: Derived calculations / Category: pdbx_struct_conn_angle / struct_conn
Revision 1.3Dec 25, 2019Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
Revision 1.4Sep 27, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
Revision 1.5Nov 15, 2023Group: Data collection / Category: chem_comp_atom / chem_comp_bond / Item: _chem_comp_atom.atom_id / _chem_comp_bond.atom_id_2

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Peptidase M42
B: Peptidase M42
C: Peptidase M42
D: Peptidase M42
E: Peptidase M42
F: Peptidase M42
G: Peptidase M42
H: Peptidase M42
I: Peptidase M42
J: Peptidase M42
K: Peptidase M42
L: Peptidase M42
hetero molecules


Theoretical massNumber of molelcules
Total (without water)480,81051
Polymers478,01412
Non-polymers2,79639
Water0
1


  • Idetical with deposited unit
  • defined by author&software
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area65040 Å2
ΔGint-572 kcal/mol
Surface area135560 Å2
MethodPISA
Unit cell
Length a, b, c (Å)114.638, 165.372, 125.789
Angle α, β, γ (deg.)90.00, 90.87, 90.00
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21B
12A
22C
13A
23D
14A
24E
15A
25F
16A
26G
17A
27H
18A
28I
19A
29J
110A
210K
111A
211L
112B
212C
113B
213D
114B
214E
115B
215F
116B
216G
117B
217H
118B
218I
119B
219J
120B
220K
121B
221L
122C
222D
123C
223E
124C
224F
125C
225G
126C
226H
127C
227I
128C
228J
129C
229K
130C
230L
131D
231E
132D
232F
133D
233G
134D
234H
135D
235I
136D
236J
137D
237K
138D
238L
139E
239F
140E
240G
141E
241H
142E
242I
143E
243J
144E
244K
145E
245L
146F
246G
147F
247H
148F
248I
149F
249J
150F
250K
151F
251L
152G
252H
153G
253I
154G
254J
155G
255K
156G
256L
157H
257I
158H
258J
159H
259K
160H
260L
161I
261J
162I
262K
163I
263L
164J
264K
165J
265L
166K
266L

NCS domain segments:

Component-ID: 0 / Refine code: 0

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11ALAALAPHEPHEAA3 - 3583 - 358
21ALAALAPHEPHEBB3 - 3583 - 358
12SERSERTHRTHRAA1 - 3591 - 359
22SERSERTHRTHRCC1 - 3591 - 359
13SERSERTHRTHRAA1 - 3591 - 359
23SERSERTHRTHRDD1 - 3591 - 359
14SERSERTHRTHRAA1 - 3591 - 359
24SERSERTHRTHREE1 - 3591 - 359
15SERSERTHRTHRAA1 - 3591 - 359
25SERSERTHRTHRFF1 - 3591 - 359
16SERSERTHRTHRAA1 - 3591 - 359
26SERSERTHRTHRGG1 - 3591 - 359
17SERSERTHRTHRAA1 - 3591 - 359
27SERSERTHRTHRHH1 - 3591 - 359
18ASPASPPHEPHEAA4 - 3584 - 358
28ASPASPPHEPHEII4 - 3584 - 358
19SERSERTHRTHRAA1 - 3591 - 359
29SERSERTHRTHRJJ1 - 3591 - 359
110SERSERTHRTHRAA1 - 3591 - 359
210SERSERTHRTHRKK1 - 3591 - 359
111ALAALAPHEPHEAA3 - 3583 - 358
211ALAALAPHEPHELL3 - 3583 - 358
112ALAALAPHEPHEBB3 - 3583 - 358
212ALAALAPHEPHECC3 - 3583 - 358
113ALAALAPHEPHEBB3 - 3583 - 358
213ALAALAPHEPHEDD3 - 3583 - 358
114ALAALAPHEPHEBB3 - 3583 - 358
214ALAALAPHEPHEEE3 - 3583 - 358
115ALAALATHRTHRBB3 - 3593 - 359
215ALAALATHRTHRFF3 - 3593 - 359
116ALAALATHRTHRBB3 - 3593 - 359
216ALAALATHRTHRGG3 - 3593 - 359
117ALAALATHRTHRBB3 - 3593 - 359
217ALAALATHRTHRHH3 - 3593 - 359
118ASPASPTHRTHRBB4 - 3594 - 359
218ASPASPTHRTHRII4 - 3594 - 359
119ALAALATHRTHRBB3 - 3593 - 359
219ALAALATHRTHRJJ3 - 3593 - 359
120ALAALATHRTHRBB3 - 3593 - 359
220ALAALATHRTHRKK3 - 3593 - 359
121ALAALATHRTHRBB3 - 3593 - 359
221ALAALATHRTHRLL3 - 3593 - 359
122SERSERTHRTHRCC1 - 3591 - 359
222SERSERTHRTHRDD1 - 3591 - 359
123SERSERTHRTHRCC1 - 3591 - 359
223SERSERTHRTHREE1 - 3591 - 359
124SERSERTHRTHRCC1 - 3591 - 359
224SERSERTHRTHRFF1 - 3591 - 359
125SERSERTHRTHRCC1 - 3591 - 359
225SERSERTHRTHRGG1 - 3591 - 359
126SERSERTHRTHRCC1 - 3591 - 359
226SERSERTHRTHRHH1 - 3591 - 359
127ASPASPPHEPHECC4 - 3584 - 358
227ASPASPPHEPHEII4 - 3584 - 358
128SERSERTHRTHRCC1 - 3591 - 359
228SERSERTHRTHRJJ1 - 3591 - 359
129SERSERTHRTHRCC1 - 3591 - 359
229SERSERTHRTHRKK1 - 3591 - 359
130ALAALATHRTHRCC3 - 3593 - 359
230ALAALATHRTHRLL3 - 3593 - 359
131SERSERTHRTHRDD1 - 3591 - 359
231SERSERTHRTHREE1 - 3591 - 359
132SERSERTHRTHRDD1 - 3591 - 359
232SERSERTHRTHRFF1 - 3591 - 359
133SERSERTHRTHRDD1 - 3591 - 359
233SERSERTHRTHRGG1 - 3591 - 359
134SERSERTHRTHRDD1 - 3591 - 359
234SERSERTHRTHRHH1 - 3591 - 359
135ASPASPPHEPHEDD4 - 3584 - 358
235ASPASPPHEPHEII4 - 3584 - 358
136SERSERTHRTHRDD1 - 3591 - 359
236SERSERTHRTHRJJ1 - 3591 - 359
137SERSERTHRTHRDD1 - 3591 - 359
237SERSERTHRTHRKK1 - 3591 - 359
138ALAALAPHEPHEDD3 - 3583 - 358
238ALAALAPHEPHELL3 - 3583 - 358
139SERSERTHRTHREE1 - 3591 - 359
239SERSERTHRTHRFF1 - 3591 - 359
140SERSERTHRTHREE1 - 3591 - 359
240SERSERTHRTHRGG1 - 3591 - 359
141SERSERTHRTHREE1 - 3591 - 359
241SERSERTHRTHRHH1 - 3591 - 359
142ASPASPPHEPHEEE4 - 3584 - 358
242ASPASPPHEPHEII4 - 3584 - 358
143SERSERTHRTHREE1 - 3591 - 359
243SERSERTHRTHRJJ1 - 3591 - 359
144SERSERTHRTHREE1 - 3591 - 359
244SERSERTHRTHRKK1 - 3591 - 359
145ALAALAPHEPHEEE3 - 3583 - 358
245ALAALAPHEPHELL3 - 3583 - 358
146SERSERTHRTHRFF1 - 3591 - 359
246SERSERTHRTHRGG1 - 3591 - 359
147SERSERTHRTHRFF1 - 3591 - 359
247SERSERTHRTHRHH1 - 3591 - 359
148ASPASPPHEPHEFF4 - 3584 - 358
248ASPASPPHEPHEII4 - 3584 - 358
149SERSERTHRTHRFF1 - 3591 - 359
249SERSERTHRTHRJJ1 - 3591 - 359
150SERSERTHRTHRFF1 - 3591 - 359
250SERSERTHRTHRKK1 - 3591 - 359
151ALAALAPHEPHEFF3 - 3583 - 358
251ALAALAPHEPHELL3 - 3583 - 358
152SERSERTHRTHRGG1 - 3591 - 359
252SERSERTHRTHRHH1 - 3591 - 359
153ASPASPPHEPHEGG4 - 3584 - 358
253ASPASPPHEPHEII4 - 3584 - 358
154SERSERTHRTHRGG1 - 3591 - 359
254SERSERTHRTHRJJ1 - 3591 - 359
155SERSERTHRTHRGG1 - 3591 - 359
255SERSERTHRTHRKK1 - 3591 - 359
156ALAALAPHEPHEGG3 - 3583 - 358
256ALAALAPHEPHELL3 - 3583 - 358
157ASPASPPHEPHEHH4 - 3584 - 358
257ASPASPPHEPHEII4 - 3584 - 358
158SERSERTHRTHRHH1 - 3591 - 359
258SERSERTHRTHRJJ1 - 3591 - 359
159SERSERTHRTHRHH1 - 3591 - 359
259SERSERTHRTHRKK1 - 3591 - 359
160ALAALAPHEPHEHH3 - 3583 - 358
260ALAALAPHEPHELL3 - 3583 - 358
161ASPASPPHEPHEII4 - 3584 - 358
261ASPASPPHEPHEJJ4 - 3584 - 358
162ASPASPPHEPHEII4 - 3584 - 358
262ASPASPPHEPHEKK4 - 3584 - 358
163ASPASPPHEPHEII4 - 3584 - 358
263ASPASPPHEPHELL4 - 3584 - 358
164SERSERTHRTHRJJ1 - 3591 - 359
264SERSERTHRTHRKK1 - 3591 - 359
165ALAALAPHEPHEJJ3 - 3583 - 358
265ALAALAPHEPHELL3 - 3583 - 358
166ALAALAPHEPHEKK3 - 3583 - 358
266ALAALAPHEPHELL3 - 3583 - 358

NCS ensembles :
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66

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Components

#1: Protein
Peptidase M42


Mass: 39834.535 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Thaumarchaeota archaeon SCGC AB-539-E09 (archaea)
Gene: MCGE09_00274 / Plasmid: pMCSG73 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) magic / References: UniProt: M7T295
#2: Chemical...
ChemComp-CO / COBALT (II) ION


Mass: 58.933 Da / Num. of mol.: 24 / Source method: obtained synthetically / Formula: Co
#3: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / Glycerol


Mass: 92.094 Da / Num. of mol.: 15 / Source method: obtained synthetically / Formula: C3H8O3

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.54 Å3/Da / Density % sol: 51.5 %
Crystal growTemperature: 277 K / Method: vapor diffusion, sitting drop / pH: 8
Details: 0.1 M magnesium formate, 15% PEG3350, 2.6 mM CoCl2, 2.6 mM L-Phe-AMC, cryo 25% glycerol

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 0.97915 Å
DetectorType: ADSC QUANTUM 315r / Detector: CCD / Date: Aug 24, 2014 / Details: mirrors
RadiationMonochromator: SI(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97915 Å / Relative weight: 1
ReflectionResolution: 2.8→50 Å / Num. obs: 116464 / % possible obs: 100 % / Observed criterion σ(I): -3 / Redundancy: 3.8 % / Rmerge(I) obs: 0.161 / Net I/σ(I): 10.81
Reflection shellResolution: 2.8→2.85 Å / Redundancy: 3.8 % / Rmerge(I) obs: 0.8 / Mean I/σ(I) obs: 1.85 / % possible all: 100

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Processing

Software
NameVersionClassification
REFMAC5.8.0073refinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 1VHE
Resolution: 2.8→30 Å / Cor.coef. Fo:Fc: 0.935 / Cor.coef. Fo:Fc free: 0.936 / SU B: 28.658 / SU ML: 0.255 / Cross valid method: THROUGHOUT / ESU R Free: 0.312 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
RfactorNum. reflection% reflectionSelection details
Rfree0.20612 1842 1.6 %RANDOM
Rwork0.19287 ---
obs0.19308 113231 99.91 %-
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parametersBiso mean: 48.343 Å2
Baniso -1Baniso -2Baniso -3
1--0.28 Å20 Å20.03 Å2
2---1.65 Å20 Å2
3---1.92 Å2
Refinement stepCycle: LAST / Resolution: 2.8→30 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms32683 0 114 0 32797
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0090.01933359
X-RAY DIFFRACTIONr_bond_other_d0.0060.0232671
X-RAY DIFFRACTIONr_angle_refined_deg1.3691.98745116
X-RAY DIFFRACTIONr_angle_other_deg1.224375374
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.43754253
X-RAY DIFFRACTIONr_dihedral_angle_2_deg33.3724.3311376
X-RAY DIFFRACTIONr_dihedral_angle_3_deg15.798155362
X-RAY DIFFRACTIONr_dihedral_angle_4_deg13.21615216
X-RAY DIFFRACTIONr_chiral_restr0.0690.25176
X-RAY DIFFRACTIONr_gen_planes_refined0.0050.02137315
X-RAY DIFFRACTIONr_gen_planes_other0.0050.026977
X-RAY DIFFRACTIONr_nbd_refined
X-RAY DIFFRACTIONr_nbd_other
X-RAY DIFFRACTIONr_nbtor_refined
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined
X-RAY DIFFRACTIONr_xyhbond_nbd_other
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it1.542.78617081
X-RAY DIFFRACTIONr_mcbond_other1.5392.78617080
X-RAY DIFFRACTIONr_mcangle_it2.6784.17121311
X-RAY DIFFRACTIONr_mcangle_other2.6784.17121312
X-RAY DIFFRACTIONr_scbond_it2.0483.05616278
X-RAY DIFFRACTIONr_scbond_other2.0473.05616278
X-RAY DIFFRACTIONr_scangle_it
X-RAY DIFFRACTIONr_scangle_other3.3574.4723806
X-RAY DIFFRACTIONr_long_range_B_refined4.8721.68634917
X-RAY DIFFRACTIONr_long_range_B_other4.8721.68634917
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION / Type: interatomic distance / Weight position: 0.05

Ens-IDDom-IDAuth asym-IDNumberRms dev position (Å)
11A218620.07
12B218620.07
21A222240.07
22C222240.07
31A219310.07
32D219310.07
41A221230.06
42E221230.06
51A220660.07
52F220660.07
61A220270.07
62G220270.07
71A221880.07
72H221880.07
81A220780.06
82I220780.06
91A221440.06
92J221440.06
101A220790.06
102K220790.06
111A214320.08
112L214320.08
121B218550.07
122C218550.07
131B218180.07
132D218180.07
141B218190.07
142E218190.07
151B220100.07
152F220100.07
161B218040.07
162G218040.07
171B219410.07
172H219410.07
181B218470.06
182I218470.06
191B219140.06
192J219140.06
201B218460.07
202K218460.07
211B216140.08
212L216140.08
221C221000.07
222D221000.07
231C222640.06
232E222640.06
241C222150.06
242F222150.06
251C221590.06
252G221590.06
261C223340.05
262H223340.05
271C220350.06
272I220350.06
281C222200.06
282J222200.06
291C220970.06
292K220970.06
301C217090.07
302L217090.07
311D221880.06
312E221880.06
321D219960.08
322F219960.08
331D218980.07
332G218980.07
341D219370.07
342H219370.07
351D218050.06
352I218050.06
361D219360.07
362J219360.07
371D220240.07
372K220240.07
381D217860.07
382L217860.07
391E220950.07
392F220950.07
401E221120.06
402G221120.06
411E220850.07
412H220850.07
421E219910.06
422I219910.06
431E221930.06
432J221930.06
441E221870.06
442K221870.06
451E216870.07
452L216870.07
461F221470.06
462G221470.06
471F221550.06
472H221550.06
481F218430.06
482I218430.06
491F221690.06
492J221690.06
501F221870.07
502K221870.07
511F217730.07
512L217730.07
521G222010.06
522H222010.06
531G219390.06
532I219390.06
541G221670.06
542J221670.06
551G220040.07
552K220040.07
561G217920.07
562L217920.07
571H220000.06
572I220000.06
581H222370.06
582J222370.06
591H220650.06
592K220650.06
601H216040.07
602L216040.07
611I218870.06
612J218870.06
621I219620.06
622K219620.06
631I215980.07
632L215980.07
641J220870.06
642K220870.06
651J217540.07
652L217540.07
661K216860.07
662L216860.07
LS refinement shellResolution: 2.8→2.872 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.312 140 -
Rwork0.306 8261 -
obs--100 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.0354-4.2493-1.360328.0464-3.60649.7569-0.0018-0.19120.16550.74310.4649-0.4284-0.6520.5251-0.46310.0887-0.00880.03380.2657-0.09210.229841.1775119.144778.7272
21.1145-0.3206-1.26460.370.82162.420.0651-0.24630.0760.05360.0859-0.12990.15250.2926-0.1510.1985-0.0071-0.04390.2631-0.09580.16342.3902100.160879.8895
31.5524-0.1356-0.55970.72080.58641.1265-0.04630.03260.0471-0.1850.04560.03090.21660.07150.00070.2924-0.030.01090.1983-0.0640.122941.722694.208250.9456
40.5287-0.0148-0.4260.10880.17671.1090.0726-0.0870.14820.1060.038-0.0940.0760.1291-0.11060.1913-0.0105-0.04940.2126-0.09310.172438.3459101.952674.5464
53.6343-1.2226-4.821920.44996.89027.78770.55350.3219-0.68540.7463-1.1182-0.9814-0.507-0.70610.56480.2128-0.0309-0.12020.36610.18670.392915.7088102.733261.8552
61.91060.04860.1692.7231-0.81790.34110.0623-0.24530.0047-0.24750.05370.10120.1128-0.0875-0.11590.2281-0.04740.02660.2408-0.01480.132820.588299.339680.3879
71.6177-0.0339-0.82371.1498-0.77433.65370.0188-0.17780.21340.00890.01470.0049-0.20770.0341-0.03350.1687-0.0076-0.02540.1677-0.09980.100226.251106.628781.1431
80.4494-0.50120.16550.5857-0.07580.6495-0.1589-0.00890.04770.23640.0497-0.02610.11550.08380.10930.4044-0.0510.0410.23960.05590.035411.167277.348891.7402
90.7523-0.99620.5291.99280.49442.557-0.07950.17070.1530.0648-0.2182-0.1152-0.13150.03750.29770.2101-0.08530.01240.22840.0060.09012.530691.15465.765
100.4061-0.28520.69280.6434-0.12931.4743-0.0849-0.0109-0.01340.2620.01830.11990.02680.01340.06660.2891-0.08280.05580.21310.0690.076810.75573.386886.5907
112.49061.3251.29030.70550.68580.67950.1594-0.60310.4390.0771-0.3320.23090.119-0.31160.17260.21740.076-0.07530.39050.0030.41259.708560.553464.2068
122.2156-0.0286-0.2761.2242-0.16091.770.02630.1223-0.3180.06480.0727-0.11550.18240.0244-0.0990.3191-0.0307-0.01850.12670.06180.150618.38457.249979.9343
131.4157-0.07032.91250.3351.029310.1588-0.0661-0.0191-0.03780.007-0.00780.044-0.107-0.1070.0740.1937-0.0159-0.02250.20490.05020.121624.674771.40479.9901
141.2689-0.31960.64771.01430.68851.15560.00110.0186-0.05480.3258-0.02210.04530.227-0.03650.02090.3439-0.0875-0.01750.19490.09950.105114.982762.716486.128
1510.67291.715510.60617.0129-6.848921.4003-0.6319-0.27820.9832-0.49630.17080.5596-0.1226-0.54110.46110.1770.1094-0.020.1481-0.01740.2428-28.3547106.805410.2057
160.8913-0.13770.26451.19041.01051.05690.0349-0.12490.00560.0027-0.17670.1974-0.0417-0.19230.14180.18840.07380.0330.2858-0.02450.2004-32.435497.61925.2994
170.74820.14750.67110.93830.76411.13960.1529-0.17610.0363-0.0612-0.1479-0.11590.0608-0.0855-0.0050.17410.00770.03550.32760.04750.1321-5.3654103.206235.7051
180.94470.3247-0.07260.41970.16080.12330.1173-0.09610.0753-0.0227-0.11010.0569-0.0371-0.0636-0.00710.19310.0634-0.00440.26440.03310.136-20.311797.203225.964
1915.62755.19294.58776.3282-4.0138.01160.03491.116-1.09131.2640.254-0.4042-1.49070.4588-0.2890.3619-0.0414-0.02530.11960.00890.2996-2.2182.751915.5547
200.77550.6821-0.03871.7233-1.07211.59030.070.0156-0.0765-0.0829-0.10050.0681-0.0599-0.01740.03050.18680.0542-0.01970.1878-0.00610.1482-22.234879.623417.595
213.20132.44440.17672.46940.75380.70880.03390.0902-0.1197-0.1486-0.0953-0.0305-0.1031-0.08990.06140.15680.1005-0.06350.24520.03610.132-24.960787.571213.7595
228.6176-8.2644-3.66512.563811.026513.74160.0999-0.1586-0.6327-0.1099-0.2030.4924-0.0774-0.55420.10310.15780.01020.05030.208-0.01060.1228-28.17291.543977.9273
230.7156-0.09920.03011.1242-0.15390.05180.0589-0.0914-0.13080.08170.03130.24190.0153-0.0452-0.09030.1586-0.07640.07410.2997-0.01210.2499-29.269981.353361.8449
242.88490.42690.37491.4585-0.47350.28430.25220.1584-0.41590.0288-0.13670.0169-0.03770.1154-0.11550.1806-0.0410.04630.2158-0.07630.1767-2.003368.838562.5169
251.3184-0.3325-0.00160.4568-0.02770.00910.0275-0.0205-0.13440.0943-0.01680.0343-0.0224-0.0369-0.01080.1636-0.01280.09810.3164-0.07520.1493-24.49786.437961.7103
265.13854.30071.23089.51915.05973.7165-0.0987-0.36580.7878-0.5270.7367-0.33130.4425-0.0927-0.63791.0497-0.7433-0.06911.0898-0.02540.3391-3.035298.961855.0027
270.4170.3398-0.5770.7481-0.54061.38920.05770.07830.1195-0.01720.0073-0.0780.0038-0.0731-0.0650.12730.04560.05570.2773-0.03580.1378-22.133198.568750.8287
283.0077-0.19711.62962.2147-0.98031.39380.0148-0.1510.17260.2460.03160.1244-0.1576-0.0882-0.04640.1240.00770.10470.279-0.10150.1402-25.159597.954559.4803
292.86220.44485.589513.6893-7.814416.47110.11680.0109-0.3209-0.34980.1352-0.58520.4102-0.0519-0.2520.17410.0114-0.05330.11330.05760.218341.310725.8853.6748
302.00390.77260.81390.97630.45480.37660.10290.1737-0.3937-0.00050.1477-0.38640.00150.0985-0.25070.21770.0153-0.01220.0846-0.06890.32741.899231.64636.393
311.01770.31640.75672.66270.84640.9508-0.086-0.0498-0.2055-0.23960.2252-0.0166-0.3293-0.038-0.13920.22960.00910.01470.1330.02420.148242.496761.845745.4061
320.70040.6150.56150.94980.73150.67490.1369-0.047-0.1589-0.04870.0808-0.27030.07160.0549-0.21770.22460.0112-0.00760.11260.02840.242438.642339.952341.0559
335.7284.15188.0453.32355.003113.48420.04480.3870.21790.2530.3750.4289-0.51060.3144-0.41970.21610.12180.13160.3955-0.03850.324915.965849.118748.2067
341.51340.2185-0.00110.59280.20552.27790.2024-0.0717-0.1906-0.0853-0.1303-0.1756-0.109-0.2557-0.07210.2081-0.0344-0.03470.12410.04920.178920.730134.780335.9791
353.00641.23060.83882.05131.87732.1460.1198-0.2474-0.3790.0318-0.056-0.06920.0864-0.0239-0.06370.2861-0.0177-0.07720.0480.08260.154226.421430.211641.6487
367.7284-0.75811.1910.1143-0.544111.03960.178-0.48650.0429-0.0619-0.0148-0.04330.55170.3305-0.16320.18890.0294-0.07110.17430.06040.253957.860753.178271.6308
370.77070.80450.59120.93130.58660.60130.1353-0.119-0.04320.2787-0.141-0.12050.0764-0.24750.00570.2776-0.0408-0.08650.24340.04930.130939.018859.074473.1782
382.4706-2.1362.02552.8414-1.59821.6853-0.3222-0.0908-0.976-0.09361.06081.1639-0.33480.0707-0.73870.3278-0.2894-0.12781.00390.28770.619520.394459.211843.5721
390.34060.52840.53230.88190.76351.04770.0694-0.0559-0.06090.1781-0.0447-0.18070.1631-0.1942-0.02480.2062-0.0006-0.11140.22220.03750.174243.260462.157371.0095
408.80551.91551.51680.41730.33180.2678-0.03350.1464-0.0465-0.00840.0417-0.0147-0.01350.0563-0.00830.32610.0374-0.04680.1741-0.04190.13748.067576.312752.4967
412.1264-0.01240.51062.06341.58432.36-0.1031-0.04520.1058-0.19150.1308-0.2784-0.2425-0.0662-0.02770.1147-0.0264-0.06190.13-0.00380.236653.118380.118467.476
420.72680.3206-0.54751.65720.6771.53750.11610.0221-0.07080.09690.0226-0.325-0.14130.0377-0.13880.14940.0159-0.13660.17340.01550.196453.694573.770972.393
4328.7259-5.17015.81211.3892-1.54511.72710.17990.36991.50220.0617-0.1853-0.0228-0.04690.2320.00540.1514-0.02370.00480.1937-0.14030.331960.3784122.215246.0792
441.503-0.0537-1.1150.6845-0.62621.6420.0785-0.05990.1355-0.02360.1958-0.0692-0.2525-0.1525-0.27430.3082-0.04490.27720.0871-0.03640.320544.5825123.591835.2938
451.1272-0.6638-0.60011.77110.14751.15910.07380.0163-0.07610.03750.22820.12410.032-0.2084-0.30190.1521-0.00890.05940.2060.06060.21225.8281108.03352.2104
460.26010.1502-0.42520.474-0.11220.81910.1001-0.03730.0881-0.08040.1984-0.0674-0.26630.1003-0.29850.2002-0.08160.15630.1761-0.06410.28247.3106117.207735.8436
478.85453.8910.12261.77570.17360.246-0.20240.0366-0.7761-0.08060.0748-0.2827-0.05880.09830.12760.2383-0.00890.00380.0943-0.02460.260447.868992.598535.6035
480.77340.6751.13672.32090.28082.06760.038-0.0334-0.1037-0.27960.2079-0.1210.1365-0.0237-0.24590.1997-0.06040.16170.1869-0.09140.232451.9362105.169624.4936
490.1947-0.4402-0.34731.04130.57322.38120.0869-0.07360.0932-0.21980.1473-0.2520.05150.0682-0.23430.1414-0.10820.14920.1439-0.06170.302254.3654111.417528.8991
501.0840.3386-0.52210.4456-0.05081.47640.05260.08220.1338-0.1502-0.048-0.1070.0827-0.3827-0.00460.1828-0.05240.03460.3029-0.02840.1775-31.05456.293631.3627
510.90950.3498-0.75060.1775-0.38082.18880.20290.08590.17470.0771-0.01850.0123-0.043-0.0925-0.18440.1777-0.00350.0230.18960.0230.1947-7.370364.177719.017
521.03812.9282-0.96228.3009-2.48572.2175-0.01360.02560.1742-0.03790.23280.4969-0.01030.884-0.21920.0096-0.00310.0160.6532-0.05430.303114.243968.08522.5723
531.19210.0277-0.84730.08920.09370.8070.10330.07290.05470.0229-0.12510.0414-0.0179-0.16750.02180.171-0.04910.0020.2312-0.02480.1811-20.224258.893130.9222
543.49375.119-4.87117.5035-7.13986.7939-0.0292-0.0975-0.1477-0.0353-0.1552-0.18970.0310.14830.18440.1555-0.0143-0.01950.2363-0.13530.2934-4.881256.688648.6047
551.8575-0.60790.57161.84310.26240.3580.0551-0.16550.1139-0.0464-0.1469-0.11080.0602-0.11310.09170.1812-0.08010.07790.2354-0.04420.115-22.33660.468150.5027
561.8537-0.8388-0.8730.46680.39652.98040.0681-0.3026-0.28720.0276-0.01740.13350.01750.1314-0.05070.1134-0.14710.07790.3085-0.00320.1902-24.631953.04845.5342
571.33840.3605-0.42620.72340.76331.4353-0.0505-0.0516-0.09430.02320.0456-0.07990.1627-0.00480.00490.3566-0.04230.01060.1634-0.06350.084811.527334.92249.4076
580.34380.2963-0.48221.1489-0.63233.093-0.1715-0.11310.0574-0.01130.118-0.06060.14380.0720.05350.21130.0053-0.01240.1751-0.03430.15273.758247.4732.8259
595.49012.6083-0.94852.19781.51454.2091-0.1962-0.17580.3389-0.11360.01740.2589-0.04260.19640.17880.1780.0178-0.02030.1687-0.14160.16171.067967.279342.5944
600.5211-0.2034-0.63980.46590.31970.8374-0.0939-0.01250.0042-0.01780.1557-0.03430.11080.0125-0.06190.2606-0.0506-0.00130.1807-0.04530.129.273243.810715.7134
6125.4997-0.7526-7.21380.19451.642514.30830.6967-0.5747-0.1567-0.1728-0.0921-0.073-1.5581-0.5149-0.60470.18270.02910.01390.2060.02410.511510.037667.986910.5075
622.82150.470.11861.49420.65741.3926-0.10950.1170.2718-0.15880.0721-0.1781-0.14160.00420.03740.2616-0.03220.05910.1352-0.01920.105718.208756.20030.0255
631.3426-0.034-0.27021.0410.20210.7663-0.02650.08760.1321-0.15210.0387-0.1094-0.0212-0.0732-0.01230.2762-0.03140.04880.1457-0.06670.095816.517647.85922.9645
6419.5031.377-2.6852.66920.19770.44520.38850.647-0.7516-0.6077-0.4313-0.2422-0.1982-0.10220.04280.3467-0.05230.06050.316-0.07670.197460.257364.8118-1.2079
650.1727-0.0104-0.19470.35190.44960.8507-0.08140.1207-0.0444-0.09290.07910.01790.08280.09140.00220.33940.04760.08570.2731-0.15420.26547.394652.60033.1758
661.3807-0.98730.84171.1874-0.31651.78910.1603-0.1052-0.2019-0.09530.08490.238-0.14860.0308-0.24520.2099-0.00970.09140.117-0.09610.240226.525275.60339.7996
670.5051-0.43660.25690.77490.08170.40110.08950.0485-0.065-0.2679-0.0211-0.0056-0.02790.0859-0.06850.24660.0250.09880.1556-0.10630.216444.72660.27637.3829
688.3911-4.60591.33583.2521-1.08640.3873-0.3807-0.09910.19940.66430.3696-0.1061-0.2958-0.15870.01110.43480.0740.08640.2689-0.07380.166547.978170.498929.5252
690.05910.12720.29041.0110.10961.90160.04870.0210.01460.24320.03980.00510.12290.1468-0.08840.12740.05690.04190.1435-0.07980.287851.647753.937523.9475
700.6675-0.94680.6123.20030.21091.1915-0.07850.0857-0.0970.09560.2653-0.0237-0.09670.2997-0.18680.07920.00440.11460.1543-0.11180.359456.073956.794416.5172
710.9938-0.43650.35641.2112-0.98560.8375-0.04610.18870.0460.0918-0.0265-0.1781-0.1370.02570.07260.3293-0.07630.15580.1515-0.02970.165342.3089101.65553.0333
723.0972-0.3658-0.4141.7643-0.86130.5780.0693-0.0384-0.05670.103-0.0584-0.1191-0.07250.0174-0.01090.1799-0.06220.05070.155-0.02520.212544.612783.105420.1458
730.6247-0.3373-0.38561.0410.01930.38310.04880.12080.0317-0.05450.0281-0.0177-0.05850.0476-0.07690.3156-0.02840.11580.2471-0.05740.06932.6986101.6182-0.9865
741.7693-0.8759-0.7213.6561.27771.86530.00050.02840.01180.08280.02760.21280.00390.0513-0.02810.28370.02280.03310.14080.03390.034118.38101.96974.3154
752.208-1.0868-0.88841.23421.53055.65570.18830.4132-0.1397-0.0202-0.4860.3016-0.1385-0.33140.29770.27310.05440.03590.3021-0.07550.123115.8899104.4813-4.9402
761.86620.49050.06341.7690.2680.04110.08370.278-0.01470.1865-0.11250.13040.041-0.01820.02880.40840.00050.12780.1228-0.01370.045127.5162100.74482.9537
772.78660.5904-0.27158.68910.49484.2528-0.24420.34930.3666-0.53830.1372-0.0934-0.13820.10850.1070.24880.02130.01470.14070.09410.079822.8073114.0809-8.3928
781.4063-1.574-0.0813.81640.92330.349-0.11210.00540.0111-0.40640.01110.1381-0.20920.00890.1010.38670.1108-0.00540.05720.0350.19553.5863124.668615.5989
790.208-0.19810.59171.65690.17422.0694-0.07930.0510.0344-0.3963-0.0081-0.1092-0.3930.17550.08740.4583-0.01640.06780.0340.04350.140918.0479132.350516.129
800.92620.6846-0.00930.85880.01811.2970.0009-0.0501-0.1772-0.01180.0237-0.22490.0071-0.1292-0.02460.22260.07480.04080.12420.05510.22023.456497.627617.5983
810.50840.44620.3890.62380.09810.685-0.0576-0.01880.0151-0.14710.0072-0.06-0.1428-0.09690.05040.33480.08870.06960.0742-0.01410.18679.412121.833120.3892
823.21350.64221.28142.75490.00150.5868-0.0491-0.5290.1023-0.0719-0.0793-0.009-0.0425-0.17180.12840.24790.00330.04070.18670.00020.19616.7854124.041439.5626
834.82924.8819-1.68286.1823-5.00729.3703-0.15490.1258-0.1108-0.37860.0204-0.12040.65290.2380.13450.23280.09230.08730.053-0.01290.264423.7679118.634927.0808
841.43371.12070.02461.4259-0.47540.77130.0164-0.03890.13320.09230.0790.1127-0.1834-0.0287-0.09540.28150.05520.09870.086-0.05970.166614.6681128.558830.9349
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A1 - 8
2X-RAY DIFFRACTION2A9 - 78
3X-RAY DIFFRACTION3A79 - 138
4X-RAY DIFFRACTION4A139 - 242
5X-RAY DIFFRACTION5A243 - 251
6X-RAY DIFFRACTION6A252 - 319
7X-RAY DIFFRACTION7A320 - 359
8X-RAY DIFFRACTION8B3 - 76
9X-RAY DIFFRACTION9B77 - 149
10X-RAY DIFFRACTION10B150 - 241
11X-RAY DIFFRACTION11B242 - 251
12X-RAY DIFFRACTION12B252 - 294
13X-RAY DIFFRACTION13B295 - 308
14X-RAY DIFFRACTION14B309 - 359
15X-RAY DIFFRACTION15C1 - 8
16X-RAY DIFFRACTION16C9 - 62
17X-RAY DIFFRACTION17C63 - 128
18X-RAY DIFFRACTION18C129 - 242
19X-RAY DIFFRACTION19C243 - 251
20X-RAY DIFFRACTION20C252 - 319
21X-RAY DIFFRACTION21C320 - 359
22X-RAY DIFFRACTION22D1 - 8
23X-RAY DIFFRACTION23D9 - 77
24X-RAY DIFFRACTION24D78 - 149
25X-RAY DIFFRACTION25D150 - 241
26X-RAY DIFFRACTION26D242 - 251
27X-RAY DIFFRACTION27D252 - 320
28X-RAY DIFFRACTION28D321 - 359
29X-RAY DIFFRACTION29E1 - 8
30X-RAY DIFFRACTION30E9 - 69
31X-RAY DIFFRACTION31E70 - 133
32X-RAY DIFFRACTION32E134 - 242
33X-RAY DIFFRACTION33E243 - 251
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