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Open data
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Basic information
Entry | Database: PDB / ID: 5cyt | ||||||||||||
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Title | REFINEMENT OF MYOGLOBIN AND CYTOCHROME C | ||||||||||||
![]() | CYTOCHROME C | ||||||||||||
![]() | ELECTRON TRANSPORT (HEME PROTEIN) | ||||||||||||
Function / homology | ![]() mitochondrial electron transport, cytochrome c to oxygen / mitochondrial electron transport, ubiquinol to cytochrome c / respirasome / mitochondrial intermembrane space / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||||||||
Biological species | ![]() | ||||||||||||
Method | ![]() | ||||||||||||
![]() | Takano, T. | ||||||||||||
![]() | Journal: Methods and Applications in Crystallographic Computing Year: 1984 Title: Refinement of Myoglobin and Cytochrome C Authors: Takano, T. #1: ![]() Title: Conformation Change of Cytochrome C. I. Ferrocytochrome C Structure Refined at 1.5 Angstroms Resolution Authors: Takano, T. / Dickerson, R.E. #2: ![]() Title: Conformation Change of Cytochrome C. II. Ferricytochrome C Refinement at 1.8 Angstroms and Comparison with the Ferrocytochrome Structure Authors: Takano, T. / Dickerson, R.E. #3: ![]() Title: Redox Conformation Changes in Refined Tuna Cytochrome C Authors: Takano, T. / Dickerson, R.E. #4: ![]() Title: Cytochrome C and the Evolution of Energy Metabolism Authors: Dickerson, R.E. #5: ![]() Title: Internal Mobility of Ferrocytochrome C Authors: Northrup, S.H. / Pear, M.R. / Mccammon, J.A. / Karplus, M. / Takano, T. #6: ![]() Title: Tuna Cytochrome C at 2.0 Angstroms Resolution. II. Ferrocytochrome Structure Analysis Authors: Takano, T. / Trus, B.L. / Mandel, N. / Mandel, G. / Kallai, O.B. / Swanson, R. / Dickerson, R.E. #7: ![]() Title: Tuna Cytochrome C at 2.0 Angstroms Resolution. I. Ferricytochrome Structure Analysis Authors: Swanson, R. / Trus, B.L. / Mandel, N. / Mandel, G. / Kallai, O.B. / Dickerson, R.E. #8: ![]() Title: The Structure of Ferrocytochrome C at 2.45 Angstroms Resolution Authors: Takano, T. / Kallai, O.B. / Swanson, R. / Dickerson, R.E. #9: ![]() Title: The Structure and History of an Ancient Protein Authors: Dickerson, R.E. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 32.3 KB | Display | ![]() |
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PDB format | ![]() | 24.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 813.9 KB | Display | ![]() |
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Full document | ![]() | 814.7 KB | Display | |
Data in XML | ![]() | 7.5 KB | Display | |
Data in CIF | ![]() | 9.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 11416.114 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Chemical | ChemComp-HEC / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.83 % |
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Processing
Software | Name: EREF / Classification: refinement | ||||||||||||
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Refinement | Rfactor Rwork: 0.159 / Highest resolution: 1.5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.5 Å
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