登録情報 | データベース: PDB / ID: 5bqe |
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タイトル | Crystal structure of Norrin in complex with the cysteine-rich domain of Frizzled 4 -Methylated form |
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要素 | |
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キーワード | SIGNALING PROTEIN / Wnt signalling pathway / Norrie disease protein / Glycoprotein / G protein coupled receptor |
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機能・相同性 | 機能・相同性情報
retina blood vessel maintenance / cone retinal bipolar cell differentiation / cerebellum vasculature morphogenesis / Wnt signaling pathway, calcium modulating pathway / Norrin signaling pathway / extracellular matrix-cell signaling / re-entry into mitotic cell cycle / progesterone secretion / retinal blood vessel morphogenesis / retinal rod cell differentiation ...retina blood vessel maintenance / cone retinal bipolar cell differentiation / cerebellum vasculature morphogenesis / Wnt signaling pathway, calcium modulating pathway / Norrin signaling pathway / extracellular matrix-cell signaling / re-entry into mitotic cell cycle / progesterone secretion / retinal blood vessel morphogenesis / retinal rod cell differentiation / locomotion involved in locomotory behavior / retina vasculature morphogenesis in camera-type eye / regulation of vascular endothelial growth factor receptor signaling pathway / ubiquitin-dependent endocytosis / Signaling by RNF43 mutants / WNT5A-dependent internalization of FZD4 / retina layer formation / retinal pigment epithelium development / non-canonical Wnt signaling pathway / positive regulation of neuron projection arborization / establishment of blood-retinal barrier / Wnt receptor activity / glycine metabolic process / microglial cell proliferation / endothelial cell differentiation / dendritic spine development / Wnt-protein binding / establishment of blood-brain barrier / vacuole organization / protein targeting to lysosome / microglia differentiation / frizzled binding / Class B/2 (Secretin family receptors) / negative regulation of cell-substrate adhesion / positive regulation of dendrite morphogenesis / lens development in camera-type eye / exploration behavior / cytokine receptor activity / optic nerve development / action potential / smoothened signaling pathway / retinal ganglion cell axon guidance / cytokine binding / decidualization / response to axon injury / blood vessel remodeling / canonical Wnt signaling pathway / vasculogenesis / cellular response to retinoic acid / tricarboxylic acid cycle / Regulation of FZD by ubiquitination / visual perception / glutathione metabolic process / substrate adhesion-dependent cell spreading / transforming growth factor beta receptor signaling pathway / Asymmetric localization of PCP proteins / cellular response to leukemia inhibitory factor / cytokine activity / PDZ domain binding / G protein-coupled receptor activity / sensory perception of sound / clathrin-coated endocytic vesicle membrane / neuron differentiation / Wnt signaling pathway / positive regulation of DNA-binding transcription factor activity / cell-cell junction / Cargo recognition for clathrin-mediated endocytosis / Clathrin-mediated endocytosis / Ca2+ pathway / nervous system development / signaling receptor activity / mitotic cell cycle / amyloid-beta binding / cellular response to hypoxia / angiogenesis / neuron apoptotic process / collagen-containing extracellular matrix / cell population proliferation / transcription by RNA polymerase II / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / response to hypoxia / protein ubiquitination / positive regulation of cell migration / inflammatory response / protein heterodimerization activity / glutamatergic synapse / ubiquitin protein ligase binding / dendrite / protein-containing complex binding / positive regulation of DNA-templated transcription / cell surface / protein homodimerization activity / extracellular space / plasma membrane類似検索 - 分子機能 Norrie disease protein / Frizzled-4 / Frizzled 4, cysteine-rich domain / Frizzled cysteine-rich domain / Frizzled cysteine-rich domain / Glycoprotein hormone subunit beta / Cystine-knot domain / Frizzled/Smoothened, transmembrane domain / Frizzled/Smoothened family membrane region / Frizzled/Smoothened family membrane region ...Norrie disease protein / Frizzled-4 / Frizzled 4, cysteine-rich domain / Frizzled cysteine-rich domain / Frizzled cysteine-rich domain / Glycoprotein hormone subunit beta / Cystine-knot domain / Frizzled/Smoothened, transmembrane domain / Frizzled/Smoothened family membrane region / Frizzled/Smoothened family membrane region / Frizzled/secreted frizzled-related protein / Frizzled / C-terminal cystine knot signature. / C-terminal cystine knot domain profile. / Cystine knot, C-terminal / Frizzled domain / Frizzled cysteine-rich domain superfamily / Fz domain / Frizzled (fz) domain profile. / C-terminal cystine knot-like domain (CTCK) / Cystine Knot Cytokines, subunit B / Cystine-knot cytokines / Cystine-knot cytokine / GPCR, family 2-like / G-protein coupled receptors family 2 profile 2. / Ribbon / Orthogonal Bundle / Mainly Beta / Mainly Alpha類似検索 - ドメイン・相同性 |
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生物種 | Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.3 Å |
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データ登録者 | Chang, T.-H. / Hsieh, F.-L. / Harlos, K. / Jones, E.Y. |
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資金援助 | 英国, 3件 組織 | 認可番号 | 国 |
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Medical Research Council (United Kingdom) | G0900084 | 英国 | Cancer Research UK | C375/A10976 | 英国 | Wellcome Trust | 090532/Z/09/Z | 英国 |
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引用 | ジャーナル: Elife / 年: 2015 タイトル: Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan. 著者: Chang, T.H. / Hsieh, F.L. / Zebisch, M. / Harlos, K. / Elegheert, J. / Jones, E.Y. |
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履歴 | 登録 | 2015年5月28日 | 登録サイト: RCSB / 処理サイト: PDBE |
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改定 1.0 | 2015年7月1日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2015年7月22日 | Group: Database references |
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改定 1.2 | 2015年7月29日 | Group: Database references |
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改定 1.3 | 2017年9月13日 | Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization |
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改定 1.4 | 2020年7月29日 | Group: Data collection / Derived calculations / Structure summary カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_site / struct_site_gen Item: _chem_comp.name / _chem_comp.type ..._chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.pdbx_role 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
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改定 1.5 | 2024年1月10日 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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