- PDB-5tnu: S. tokodaii XPB II crystal structure at 3.0 Angstrom resolution -
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Basic information
Entry
Database: PDB / ID: 5tnu
Title
S. tokodaii XPB II crystal structure at 3.0 Angstrom resolution
Components
DNA-dependent ATPase XPBII
Keywords
TRANSCRIPTION / Helicase / NER
Function / homology
Function and homology information
DNA 3'-5' helicase / transcription preinitiation complex / 3'-5' DNA helicase activity / transcription initiation at RNA polymerase II promoter / hydrolase activity / DNA binding / ATP binding / metal ion binding Similarity search - Function
Xeroderma pigmentosum group B helicase, damage recognition domain / Xeroderma pigmentosum group B helicase damage recognition domain / Helicase/UvrB, N-terminal / Type III restriction enzyme, res subunit / Helicase conserved C-terminal domain / helicase superfamily c-terminal domain / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal ...Xeroderma pigmentosum group B helicase, damage recognition domain / Xeroderma pigmentosum group B helicase damage recognition domain / Helicase/UvrB, N-terminal / Type III restriction enzyme, res subunit / Helicase conserved C-terminal domain / helicase superfamily c-terminal domain / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal / Helicase superfamily 1/2, ATP-binding domain / P-loop containing nucleotide triphosphate hydrolases / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
Mass: 18.015 Da / Num. of mol.: 129 / Source method: isolated from a natural source / Formula: H2O
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 3.9 Å3/Da / Density % sol: 68.48 %
Crystal grow
Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.6 Details: 1:1 ratio of protein with 10 mM sodium citrate pH 5.6, 1770 mM ammonium sulfate
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Data collection
Diffraction
Mean temperature: 100 K
Diffraction source
Source: SYNCHROTRON / Site: ALS / Beamline: 12.3.1 / Wavelength: 1 Å
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