- PDB-4ygm: Vaccinia virus his-D4/A20(1-50) in complex with uracil -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4ygm
Title
Vaccinia virus his-D4/A20(1-50) in complex with uracil
Components
DNA polymerase processivity factor component A20
Uracil-DNA glycosylase
Keywords
HYDROLASE / Uracil DNA glycosidase / virus replication
Function / homology
Function and homology information
uracil-DNA glycosylase / viral DNA genome replication / uracil DNA N-glycosylase activity / DNA replication / DNA repair / DNA binding Similarity search - Function
Resolution: 1.85→80.36 Å / Cor.coef. Fo:Fc: 0.96 / Cor.coef. Fo:Fc free: 0.949 / SU B: 6.546 / SU ML: 0.099 / Cross valid method: THROUGHOUT / ESU R: 0.13 / ESU R Free: 0.123 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.22248
2992
5 %
RANDOM
Rwork
0.19067
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obs
0.19229
57089
95.09 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK