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Yorodumi- PDB-4y2o: Structure of CFA/I pili chaperone-major subunit complex (CfaA-CfaB) -
+Open data
-Basic information
Entry | Database: PDB / ID: 4y2o | ||||||
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Title | Structure of CFA/I pili chaperone-major subunit complex (CfaA-CfaB) | ||||||
Components |
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Keywords | STRUCTURAL PROTEIN / Enterotoxigenic Escherichia coli / periplasmic chaperone / major pilin / self-assembly / fimbriae | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Escherichia coli O78:H11 | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.419 Å | ||||||
Authors | Bao, R. / Xia, D. | ||||||
Citation | Journal: Mol. Microbiol. / Year: 2016 Title: Off-pathway assembly of fimbria subunits is prevented by chaperone CfaA of CFA/I fimbriae from enterotoxigenic E. coli. Authors: Bao, R. / Liu, Y. / Savarino, S.J. / Xia, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4y2o.cif.gz | 90.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4y2o.ent.gz | 66.2 KB | Display | PDB format |
PDBx/mmJSON format | 4y2o.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/y2/4y2o ftp://data.pdbj.org/pub/pdb/validation_reports/y2/4y2o | HTTPS FTP |
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-Related structure data
Related structure data | 4y2lC 4y2nC 3f84S C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 26493.488 Da / Num. of mol.: 1 / Fragment: UNP residues 19-238 / Mutation: T112I Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli O78:H11 (strain H10407 / ETEC) (bacteria) Strain: H10407 / ETEC / Gene: cfaA, ETEC_p948_0390 / Production host: Escherichia coli (E. coli) / References: UniProt: E3PPC3 | ||||
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#2: Protein | Mass: 14715.560 Da / Num. of mol.: 1 / Fragment: UNP residues 38-170 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli O78:H11 (strain H10407 / ETEC) (bacteria) Strain: H10407 / ETEC / Gene: cfaB, ETEC_p948_0400 / Production host: Escherichia coli (E. coli) / References: UniProt: E3PPC4 | ||||
#3: Chemical | #4: Chemical | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.93 Å3/Da / Density % sol: 58.03 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: Na2HPO4-NaH2PO4 pH 6.6, 9% PEG8000 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 22-BM / Wavelength: 1 Å |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Jun 15, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.32→44.464 Å / Num. obs: 18960 / % possible obs: 96.4 % / Redundancy: 7.5 % / Rmerge(I) obs: 0.079 / Net I/σ(I): 20 |
Reflection shell | Resolution: 2.32→2.4 Å / Redundancy: 2.3 % / Rmerge(I) obs: 0.474 / Mean I/σ(I) obs: 1 / % possible all: 72.2 |
-Processing
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 3F84 Resolution: 2.419→44.464 Å / Cross valid method: FREE R-VALUE / σ(F): 1.14 / Phase error: 31.2 / Stereochemistry target values: TWIN_LSQ_F
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.419→44.464 Å
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Refine LS restraints |
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LS refinement shell |
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