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Yorodumi- PDB-4xcd: Crystal structure of an octadecameric TF55 complex from S. solfat... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4xcd | ||||||
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Title | Crystal structure of an octadecameric TF55 complex from S. solfataricus | ||||||
Components | Thermosome subunit beta | ||||||
Keywords | CHAPERONE / Protein Folding / Thermosomes / Chaperonin | ||||||
Function / homology | Function and homology information ATP-dependent protein folding chaperone / unfolded protein binding / protein folding / ATP hydrolysis activity / ATP binding / identical protein binding Similarity search - Function | ||||||
Biological species | Sulfolobus solfataricus (archaea) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.79 Å | ||||||
Authors | Chaston, J.J. / Stewart, A.G. / Smits, C. / Stock, D. | ||||||
Funding support | Australia, 1items
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Citation | Journal: Structure / Year: 2016 Title: Structural and Functional Insights into the Evolution and Stress Adaptation of Type II Chaperonins. Authors: Jessica J Chaston / Callum Smits / David Aragão / Andrew S W Wong / Bilal Ahsan / Sara Sandin / Sudheer K Molugu / Sanjay K Molugu / Ricardo A Bernal / Daniela Stock / Alastair G Stewart / Abstract: Chaperonins are essential biological complexes assisting protein folding in all kingdoms of life. Whereas homooligomeric bacterial GroEL binds hydrophobic substrates non-specifically, the ...Chaperonins are essential biological complexes assisting protein folding in all kingdoms of life. Whereas homooligomeric bacterial GroEL binds hydrophobic substrates non-specifically, the heterooligomeric eukaryotic CCT binds specifically to distinct classes of substrates. Sulfolobales, which survive in a wide range of temperatures, have evolved three different chaperonin subunits (α, β, γ) that form three distinct complexes tailored for different substrate classes at cold, normal, and elevated temperatures. The larger octadecameric β complexes cater for substrates under heat stress, whereas smaller hexadecameric αβ complexes prevail under normal conditions. The cold-shock complex contains all three subunits, consistent with greater substrate specificity. Structural analysis using crystallography and electron microscopy reveals the geometry of these complexes and shows a novel arrangement of the α and β subunits in the hexadecamer enabling incorporation of the γ subunit. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4xcd.cif.gz | 578.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4xcd.ent.gz | 475.8 KB | Display | PDB format |
PDBx/mmJSON format | 4xcd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4xcd_validation.pdf.gz | 1.8 MB | Display | wwPDB validaton report |
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Full document | 4xcd_full_validation.pdf.gz | 1.9 MB | Display | |
Data in XML | 4xcd_validation.xml.gz | 101.5 KB | Display | |
Data in CIF | 4xcd_validation.cif.gz | 134.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xc/4xcd ftp://data.pdbj.org/pub/pdb/validation_reports/xc/4xcd | HTTPS FTP |
-Related structure data
Related structure data | 6291C 4xcgC 4xciC 3ko1S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Symmetry | Point symmetry: (Schoenflies symbol: C9 (9 fold cyclic)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Beg auth comp-ID: GLY / Beg label comp-ID: GLY / Refine code: _
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