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- PDB-4v99: The Crystallographic Structure of Panicum Mosaic Virus -

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基本情報

登録情報
データベース: PDB / ID: 4v99
タイトルThe Crystallographic Structure of Panicum Mosaic Virus
要素
  • 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
  • Capsid protein
キーワードVIRUS/RNA / icosahedral virus / tombusviridae / RNA hairpin / virus coat protein / Swiss jelly roll fold / VIRUS-RNA complex
機能・相同性Icosahedral viral capsid protein, S domain / Viral coat protein (S domain) / T=3 icosahedral viral capsid / Viral coat protein subunit / structural molecule activity / RNA / RNA (> 10) / Capsid protein
機能・相同性情報
生物種Panicum mosaic virus (ウイルス)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.9 Å
データ登録者Makino, D.L. / Larson, S.B. / McPherson, A.
引用
ジャーナル: J.Struct.Biol. / 年: 2013
タイトル: The crystallographic structure of Panicum Mosaic Virus (PMV).
著者: Makino, D.L. / Larson, S.B. / McPherson, A.
#1: ジャーナル: Acta Crystallogr.,Sect.D / 年: 2005
タイトル: Preliminary analysis of crystals of panicum mosaic virus (PMV) by X-ray diffraction and atomic force microscopy.
著者: Makino, D.L. / Larson, S.B. / McPherson, A.
履歴
登録2012年7月4日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02014年7月9日Provider: repository / タイプ: Initial release
置き換え2014年12月10日ID: 4FY1, 4FY2, 4FY3, 4FY4, 4FY5, 4FY6, 4FY7, 4FY8, 4FY9, 4FYA
改定 1.12014年12月10日Group: Other
改定 1.22023年9月20日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
AA: Capsid protein
AB: Capsid protein
AC: Capsid protein
AD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AF: Capsid protein
AG: Capsid protein
AH: Capsid protein
AI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AK: Capsid protein
AL: Capsid protein
AM: Capsid protein
AN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AP: Capsid protein
AQ: Capsid protein
AR: Capsid protein
AS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AU: Capsid protein
AV: Capsid protein
AW: Capsid protein
AX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AZ: Capsid protein
Aa: Capsid protein
Ab: Capsid protein
Ac: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ae: Capsid protein
Af: Capsid protein
Ag: Capsid protein
Ah: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Aj: Capsid protein
Ak: Capsid protein
Al: Capsid protein
Am: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ao: Capsid protein
Ap: Capsid protein
Aq: Capsid protein
Ar: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
At: Capsid protein
Au: Capsid protein
Av: Capsid protein
Aw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ay: Capsid protein
Az: Capsid protein
A1: Capsid protein
A2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
A4: Capsid protein
A5: Capsid protein
A6: Capsid protein
A7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BA: Capsid protein
BB: Capsid protein
BC: Capsid protein
BD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BF: Capsid protein
BG: Capsid protein
BH: Capsid protein
BI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BK: Capsid protein
BL: Capsid protein
BM: Capsid protein
BN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BP: Capsid protein
BQ: Capsid protein
BR: Capsid protein
BS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BU: Capsid protein
BV: Capsid protein
BW: Capsid protein
BX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BZ: Capsid protein
Ba: Capsid protein
Bb: Capsid protein
Bc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Be: Capsid protein
Bf: Capsid protein
Bg: Capsid protein
Bh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bj: Capsid protein
Bk: Capsid protein
Bl: Capsid protein
Bm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bo: Capsid protein
Bp: Capsid protein
Bq: Capsid protein
Br: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bt: Capsid protein
Bu: Capsid protein
Bv: Capsid protein
Bw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
By: Capsid protein
Bz: Capsid protein
B1: Capsid protein
B2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
B4: Capsid protein
B5: Capsid protein
B6: Capsid protein
B7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CA: Capsid protein
CB: Capsid protein
CC: Capsid protein
CD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CF: Capsid protein
CG: Capsid protein
CH: Capsid protein
CI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CK: Capsid protein
CL: Capsid protein
CM: Capsid protein
CN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CP: Capsid protein
CQ: Capsid protein
CR: Capsid protein
CS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CU: Capsid protein
CV: Capsid protein
CW: Capsid protein
CX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CZ: Capsid protein
Ca: Capsid protein
Cb: Capsid protein
Cc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ce: Capsid protein
Cf: Capsid protein
Cg: Capsid protein
Ch: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cj: Capsid protein
Ck: Capsid protein
Cl: Capsid protein
Cm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Co: Capsid protein
Cp: Capsid protein
Cq: Capsid protein
Cr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ct: Capsid protein
Cu: Capsid protein
Cv: Capsid protein
Cw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cy: Capsid protein
Cz: Capsid protein
C1: Capsid protein
C2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
C4: Capsid protein
C5: Capsid protein
C6: Capsid protein
C7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DA: Capsid protein
DB: Capsid protein
DC: Capsid protein
DD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DF: Capsid protein
DG: Capsid protein
DH: Capsid protein
DI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DK: Capsid protein
DL: Capsid protein
DM: Capsid protein
DN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DP: Capsid protein
DQ: Capsid protein
DR: Capsid protein
DS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DU: Capsid protein
DV: Capsid protein
DW: Capsid protein
DX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DZ: Capsid protein
Da: Capsid protein
Db: Capsid protein
Dc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
De: Capsid protein
Df: Capsid protein
Dg: Capsid protein
Dh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dj: Capsid protein
Dk: Capsid protein
Dl: Capsid protein
Dm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Do: Capsid protein
Dp: Capsid protein
Dq: Capsid protein
Dr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dt: Capsid protein
Du: Capsid protein
Dv: Capsid protein
Dw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dy: Capsid protein
Dz: Capsid protein
D1: Capsid protein
D2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
D4: Capsid protein
D5: Capsid protein
D6: Capsid protein
D7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EA: Capsid protein
EB: Capsid protein
EC: Capsid protein
ED: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EF: Capsid protein
EG: Capsid protein
EH: Capsid protein
EI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EK: Capsid protein
EL: Capsid protein
EM: Capsid protein
EN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EP: Capsid protein
EQ: Capsid protein
ER: Capsid protein
ES: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EU: Capsid protein
EV: Capsid protein
EW: Capsid protein
EX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EZ: Capsid protein
Ea: Capsid protein
Eb: Capsid protein
Ec: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ee: Capsid protein
Ef: Capsid protein
Eg: Capsid protein
Eh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ej: Capsid protein
Ek: Capsid protein
El: Capsid protein
Em: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Eo: Capsid protein
Ep: Capsid protein
Eq: Capsid protein
Er: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Et: Capsid protein
Eu: Capsid protein
Ev: Capsid protein
Ew: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ey: Capsid protein
Ez: Capsid protein
E1: Capsid protein
E2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
E4: Capsid protein
E5: Capsid protein
E6: Capsid protein
E7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FA: Capsid protein
FB: Capsid protein
FC: Capsid protein
FD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FF: Capsid protein
FG: Capsid protein
FH: Capsid protein
FI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FK: Capsid protein
FL: Capsid protein
FM: Capsid protein
FN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FP: Capsid protein
FQ: Capsid protein
FR: Capsid protein
FS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FU: Capsid protein
FV: Capsid protein
FW: Capsid protein
FX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FZ: Capsid protein
Fa: Capsid protein
Fb: Capsid protein
Fc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fe: Capsid protein
Ff: Capsid protein
Fg: Capsid protein
Fh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fj: Capsid protein
Fk: Capsid protein
Fl: Capsid protein
Fm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fo: Capsid protein
Fp: Capsid protein
Fq: Capsid protein
Fr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ft: Capsid protein
Fu: Capsid protein
Fv: Capsid protein
Fw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fy: Capsid protein
Fz: Capsid protein
F1: Capsid protein
F2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
F4: Capsid protein
F5: Capsid protein
F6: Capsid protein
F7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GA: Capsid protein
GB: Capsid protein
GC: Capsid protein
GD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GF: Capsid protein
GG: Capsid protein
GH: Capsid protein
GI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GK: Capsid protein
GL: Capsid protein
GM: Capsid protein
GN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GP: Capsid protein
GQ: Capsid protein
GR: Capsid protein
GS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GU: Capsid protein
GV: Capsid protein
GW: Capsid protein
GX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GZ: Capsid protein
Ga: Capsid protein
Gb: Capsid protein
Gc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ge: Capsid protein
Gf: Capsid protein
Gg: Capsid protein
Gh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gj: Capsid protein
Gk: Capsid protein
Gl: Capsid protein
Gm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Go: Capsid protein
Gp: Capsid protein
Gq: Capsid protein
Gr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gt: Capsid protein
Gu: Capsid protein
Gv: Capsid protein
Gw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gy: Capsid protein
Gz: Capsid protein
G1: Capsid protein
G2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
G4: Capsid protein
G5: Capsid protein
G6: Capsid protein
G7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HA: Capsid protein
HB: Capsid protein
HC: Capsid protein
HD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HF: Capsid protein
HG: Capsid protein
HH: Capsid protein
HI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HK: Capsid protein
HL: Capsid protein
HM: Capsid protein
HN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HP: Capsid protein
HQ: Capsid protein
HR: Capsid protein
HS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HU: Capsid protein
HV: Capsid protein
HW: Capsid protein
HX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HZ: Capsid protein
Ha: Capsid protein
Hb: Capsid protein
Hc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
He: Capsid protein
Hf: Capsid protein
Hg: Capsid protein
Hh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hj: Capsid protein
Hk: Capsid protein
Hl: Capsid protein
Hm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ho: Capsid protein
Hp: Capsid protein
Hq: Capsid protein
Hr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ht: Capsid protein
Hu: Capsid protein
Hv: Capsid protein
Hw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hy: Capsid protein
Hz: Capsid protein
H1: Capsid protein
H2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
H4: Capsid protein
H5: Capsid protein
H6: Capsid protein
H7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IA: Capsid protein
IB: Capsid protein
IC: Capsid protein
ID: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IF: Capsid protein
IG: Capsid protein
IH: Capsid protein
II: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IK: Capsid protein
IL: Capsid protein
IM: Capsid protein
IN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IP: Capsid protein
IQ: Capsid protein
IR: Capsid protein
IS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IU: Capsid protein
IV: Capsid protein
IW: Capsid protein
IX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IZ: Capsid protein
Ia: Capsid protein
Ib: Capsid protein
Ic: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ie: Capsid protein
If: Capsid protein
Ig: Capsid protein
Ih: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ij: Capsid protein
Ik: Capsid protein
Il: Capsid protein
Im: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Io: Capsid protein
Ip: Capsid protein
Iq: Capsid protein
Ir: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
It: Capsid protein
Iu: Capsid protein
Iv: Capsid protein
Iw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Iy: Capsid protein
Iz: Capsid protein
I1: Capsid protein
I2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
I4: Capsid protein
I5: Capsid protein
I6: Capsid protein
I7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JA: Capsid protein
JB: Capsid protein
JC: Capsid protein
JD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JF: Capsid protein
JG: Capsid protein
JH: Capsid protein
JI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JK: Capsid protein
JL: Capsid protein
JM: Capsid protein
JN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JP: Capsid protein
JQ: Capsid protein
JR: Capsid protein
JS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JU: Capsid protein
JV: Capsid protein
JW: Capsid protein
JX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JZ: Capsid protein
Ja: Capsid protein
Jb: Capsid protein
Jc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Je: Capsid protein
Jf: Capsid protein
Jg: Capsid protein
Jh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jj: Capsid protein
Jk: Capsid protein
Jl: Capsid protein
Jm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jo: Capsid protein
Jp: Capsid protein
Jq: Capsid protein
Jr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jt: Capsid protein
Ju: Capsid protein
Jv: Capsid protein
Jw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jy: Capsid protein
Jz: Capsid protein
J1: Capsid protein
J2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
J4: Capsid protein
J5: Capsid protein
J6: Capsid protein
J7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)10,135,475600
ポリマ－10,130,666480
非ポリマー4,809120
水00
1
AA: Capsid protein
AB: Capsid protein
AC: Capsid protein
AD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AF: Capsid protein
AG: Capsid protein
AH: Capsid protein
AI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AK: Capsid protein
AL: Capsid protein
AM: Capsid protein
AN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AP: Capsid protein
AQ: Capsid protein
AR: Capsid protein
AS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AU: Capsid protein
AV: Capsid protein
AW: Capsid protein
AX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AZ: Capsid protein
Aa: Capsid protein
Ab: Capsid protein
Ac: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ae: Capsid protein
Af: Capsid protein
Ag: Capsid protein
Ah: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Aj: Capsid protein
Ak: Capsid protein
Al: Capsid protein
Am: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ao: Capsid protein
Ap: Capsid protein
Aq: Capsid protein
Ar: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
At: Capsid protein
Au: Capsid protein
Av: Capsid protein
Aw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ay: Capsid protein
Az: Capsid protein
A1: Capsid protein
A2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
A4: Capsid protein
A5: Capsid protein
A6: Capsid protein
A7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BA: Capsid protein
BB: Capsid protein
BC: Capsid protein
BD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BF: Capsid protein
BG: Capsid protein
BH: Capsid protein
BI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BK: Capsid protein
BL: Capsid protein
BM: Capsid protein
BN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BP: Capsid protein
BQ: Capsid protein
BR: Capsid protein
BS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BU: Capsid protein
BV: Capsid protein
BW: Capsid protein
BX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BZ: Capsid protein
Ba: Capsid protein
Bb: Capsid protein
Bc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Be: Capsid protein
Bf: Capsid protein
Bg: Capsid protein
Bh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bj: Capsid protein
Bk: Capsid protein
Bl: Capsid protein
Bm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bo: Capsid protein
Bp: Capsid protein
Bq: Capsid protein
Br: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bt: Capsid protein
Bu: Capsid protein
Bv: Capsid protein
Bw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
By: Capsid protein
Bz: Capsid protein
B1: Capsid protein
B2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
B4: Capsid protein
B5: Capsid protein
B6: Capsid protein
B7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CA: Capsid protein
CB: Capsid protein
CC: Capsid protein
CD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CF: Capsid protein
CG: Capsid protein
CH: Capsid protein
CI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CK: Capsid protein
CL: Capsid protein
CM: Capsid protein
CN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CP: Capsid protein
CQ: Capsid protein
CR: Capsid protein
CS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CU: Capsid protein
CV: Capsid protein
CW: Capsid protein
CX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CZ: Capsid protein
Ca: Capsid protein
Cb: Capsid protein
Cc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ce: Capsid protein
Cf: Capsid protein
Cg: Capsid protein
Ch: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cj: Capsid protein
Ck: Capsid protein
Cl: Capsid protein
Cm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Co: Capsid protein
Cp: Capsid protein
Cq: Capsid protein
Cr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ct: Capsid protein
Cu: Capsid protein
Cv: Capsid protein
Cw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cy: Capsid protein
Cz: Capsid protein
C1: Capsid protein
C2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
C4: Capsid protein
C5: Capsid protein
C6: Capsid protein
C7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DA: Capsid protein
DB: Capsid protein
DC: Capsid protein
DD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DF: Capsid protein
DG: Capsid protein
DH: Capsid protein
DI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DK: Capsid protein
DL: Capsid protein
DM: Capsid protein
DN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DP: Capsid protein
DQ: Capsid protein
DR: Capsid protein
DS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DU: Capsid protein
DV: Capsid protein
DW: Capsid protein
DX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DZ: Capsid protein
Da: Capsid protein
Db: Capsid protein
Dc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
De: Capsid protein
Df: Capsid protein
Dg: Capsid protein
Dh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dj: Capsid protein
Dk: Capsid protein
Dl: Capsid protein
Dm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Do: Capsid protein
Dp: Capsid protein
Dq: Capsid protein
Dr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dt: Capsid protein
Du: Capsid protein
Dv: Capsid protein
Dw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dy: Capsid protein
Dz: Capsid protein
D1: Capsid protein
D2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
D4: Capsid protein
D5: Capsid protein
D6: Capsid protein
D7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EA: Capsid protein
EB: Capsid protein
EC: Capsid protein
ED: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EF: Capsid protein
EG: Capsid protein
EH: Capsid protein
EI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EK: Capsid protein
EL: Capsid protein
EM: Capsid protein
EN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EP: Capsid protein
EQ: Capsid protein
ER: Capsid protein
ES: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EU: Capsid protein
EV: Capsid protein
EW: Capsid protein
EX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EZ: Capsid protein
Ea: Capsid protein
Eb: Capsid protein
Ec: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ee: Capsid protein
Ef: Capsid protein
Eg: Capsid protein
Eh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ej: Capsid protein
Ek: Capsid protein
El: Capsid protein
Em: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Eo: Capsid protein
Ep: Capsid protein
Eq: Capsid protein
Er: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Et: Capsid protein
Eu: Capsid protein
Ev: Capsid protein
Ew: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ey: Capsid protein
Ez: Capsid protein
E1: Capsid protein
E2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
E4: Capsid protein
E5: Capsid protein
E6: Capsid protein
E7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)5,067,737300
ポリマ－5,065,333240
非ポリマー2,40560
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
2
FA: Capsid protein
FB: Capsid protein
FC: Capsid protein
FD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FF: Capsid protein
FG: Capsid protein
FH: Capsid protein
FI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FK: Capsid protein
FL: Capsid protein
FM: Capsid protein
FN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FP: Capsid protein
FQ: Capsid protein
FR: Capsid protein
FS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FU: Capsid protein
FV: Capsid protein
FW: Capsid protein
FX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FZ: Capsid protein
Fa: Capsid protein
Fb: Capsid protein
Fc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fe: Capsid protein
Ff: Capsid protein
Fg: Capsid protein
Fh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fj: Capsid protein
Fk: Capsid protein
Fl: Capsid protein
Fm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fo: Capsid protein
Fp: Capsid protein
Fq: Capsid protein
Fr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ft: Capsid protein
Fu: Capsid protein
Fv: Capsid protein
Fw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fy: Capsid protein
Fz: Capsid protein
F1: Capsid protein
F2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
F4: Capsid protein
F5: Capsid protein
F6: Capsid protein
F7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GA: Capsid protein
GB: Capsid protein
GC: Capsid protein
GD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GF: Capsid protein
GG: Capsid protein
GH: Capsid protein
GI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GK: Capsid protein
GL: Capsid protein
GM: Capsid protein
GN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GP: Capsid protein
GQ: Capsid protein
GR: Capsid protein
GS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GU: Capsid protein
GV: Capsid protein
GW: Capsid protein
GX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GZ: Capsid protein
Ga: Capsid protein
Gb: Capsid protein
Gc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ge: Capsid protein
Gf: Capsid protein
Gg: Capsid protein
Gh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gj: Capsid protein
Gk: Capsid protein
Gl: Capsid protein
Gm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Go: Capsid protein
Gp: Capsid protein
Gq: Capsid protein
Gr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gt: Capsid protein
Gu: Capsid protein
Gv: Capsid protein
Gw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gy: Capsid protein
Gz: Capsid protein
G1: Capsid protein
G2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
G4: Capsid protein
G5: Capsid protein
G6: Capsid protein
G7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HA: Capsid protein
HB: Capsid protein
HC: Capsid protein
HD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HF: Capsid protein
HG: Capsid protein
HH: Capsid protein
HI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HK: Capsid protein
HL: Capsid protein
HM: Capsid protein
HN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HP: Capsid protein
HQ: Capsid protein
HR: Capsid protein
HS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HU: Capsid protein
HV: Capsid protein
HW: Capsid protein
HX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HZ: Capsid protein
Ha: Capsid protein
Hb: Capsid protein
Hc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
He: Capsid protein
Hf: Capsid protein
Hg: Capsid protein
Hh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hj: Capsid protein
Hk: Capsid protein
Hl: Capsid protein
Hm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ho: Capsid protein
Hp: Capsid protein
Hq: Capsid protein
Hr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ht: Capsid protein
Hu: Capsid protein
Hv: Capsid protein
Hw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hy: Capsid protein
Hz: Capsid protein
H1: Capsid protein
H2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
H4: Capsid protein
H5: Capsid protein
H6: Capsid protein
H7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IA: Capsid protein
IB: Capsid protein
IC: Capsid protein
ID: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IF: Capsid protein
IG: Capsid protein
IH: Capsid protein
II: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IK: Capsid protein
IL: Capsid protein
IM: Capsid protein
IN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IP: Capsid protein
IQ: Capsid protein
IR: Capsid protein
IS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IU: Capsid protein
IV: Capsid protein
IW: Capsid protein
IX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IZ: Capsid protein
Ia: Capsid protein
Ib: Capsid protein
Ic: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ie: Capsid protein
If: Capsid protein
Ig: Capsid protein
Ih: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ij: Capsid protein
Ik: Capsid protein
Il: Capsid protein
Im: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Io: Capsid protein
Ip: Capsid protein
Iq: Capsid protein
Ir: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
It: Capsid protein
Iu: Capsid protein
Iv: Capsid protein
Iw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Iy: Capsid protein
Iz: Capsid protein
I1: Capsid protein
I2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
I4: Capsid protein
I5: Capsid protein
I6: Capsid protein
I7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JA: Capsid protein
JB: Capsid protein
JC: Capsid protein
JD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JF: Capsid protein
JG: Capsid protein
JH: Capsid protein
JI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JK: Capsid protein
JL: Capsid protein
JM: Capsid protein
JN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JP: Capsid protein
JQ: Capsid protein
JR: Capsid protein
JS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JU: Capsid protein
JV: Capsid protein
JW: Capsid protein
JX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JZ: Capsid protein
Ja: Capsid protein
Jb: Capsid protein
Jc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Je: Capsid protein
Jf: Capsid protein
Jg: Capsid protein
Jh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jj: Capsid protein
Jk: Capsid protein
Jl: Capsid protein
Jm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jo: Capsid protein
Jp: Capsid protein
Jq: Capsid protein
Jr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jt: Capsid protein
Ju: Capsid protein
Jv: Capsid protein
Jw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jy: Capsid protein
Jz: Capsid protein
J1: Capsid protein
J2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
J4: Capsid protein
J5: Capsid protein
J6: Capsid protein
J7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)5,067,737300
ポリマ－5,065,333240
非ポリマー2,40560
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)411.740, 403.900, 412.460
Angle α, β, γ (deg.)90.000, 89.650, 90.000
Int Tables number4
Space group name H-MP1211
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID
11
22
33
44
55
66
77
88
/ NCSアンサンブル:
ID
1
2
3
4
5
6
7
8

-
要素

#1: タンパク質 ...
Capsid protein / Coat protein / p26


分子量: 26390.064 Da / 分子数: 360 / 由来タイプ: 天然 / 由来: (天然) Panicum mosaic virus (ウイルス) / 株: United States/Kansas 109S / 参照: UniProt: P89036
#2: RNA鎖 ...
5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'


分子量: 5252.021 Da / 分子数: 120 / 由来タイプ: 天然 / 詳細: arbitrary RNA hairpin / 由来: (天然) Panicum mosaic virus (ウイルス) / 株: United States/Kansas 109S
#3: 化合物...
ChemComp-CA / CALCIUM ION / カルシウムジカチオン


分子量: 40.078 Da / 分子数: 120 / 由来タイプ: 合成 / 式: Ca

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 2.79 Å3/Da / 溶媒含有率: 56 %
結晶化温度: 291 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 5.5
詳細: 10% PEG400, 0.1 M citric acid, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: ALS / ビームライン: 5.0.2 / 波長: 1 Å
検出器タイプ: ADSC QUANTUM 210 / 検出器: CCD / 日付: 2004年2月28日
放射モノクロメーター: liquid nitrogen cooled, double-crystal Si(111)
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1 Å / 相対比: 1
反射解像度: 2.71→50.01 Å / Num. obs: 2279719 / % possible obs: 63 % / 冗長度: 3.14 % / Biso Wilson estimate: 73.7 Å2 / Rmerge(I) obs: 0.136 / Χ2: 0.97 / Net I/σ(I): 6.8 / Scaling rejects: 146129
反射 シェル

Diffraction-ID: 1

解像度 (Å)冗長度 (%)Rmerge(I) obsMean I/σ(I) obsNum. measured allNum. unique allΧ2% possible all
2.71-2.812.260.3462.539843176070.844.9
2.81-2.922.450.3382.7142632582730.8316.1
2.92-3.052.560.3192.92621831021620.8528.3
3.05-3.222.670.2993.34118541529620.9242.3
3.22-3.422.810.2793.66107902146150.9959.4
3.42-3.683.020.254.1893552292111180.8
3.68-4.053.310.2134.812130633583921.0499.1
4.05-4.643.360.1476.512455113603771.0199.6
4.64-5.843.370.1118.512529063608010.9699.6
5.84-50.013.340.06513.312340963624190.9199.6

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解析

ソフトウェア
名称バージョン分類NB
d*TREK9.2Lデータスケーリング
CNS1.3精密化
PDB_EXTRACT3.006データ抽出
ADSCQuantumデータ収集
d*TREKデータ削減
CNS1.1位相決定
精密化構造決定の手法: 分子置換
開始モデル: PDB ENTRY 1C8N

1c8n


解像度: 2.9→50.01 Å / Rfactor Rfree error: 0.001 / Occupancy max: 1 / Occupancy min: 1 / Data cutoff high absF: 55888 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / 交差検証法: THROUGHOUT / σ(F): 0 / 立体化学のターゲット値: Engh & Huber / 詳細: BULK SOLVENT MODEL USED
Rfactor反射数%反射Selection details
Rfree0.285 221945 10 %RANDOM
Rwork0.251 ---
all0.255 2217465 --
obs0.255 2217465 74.9 %-
溶媒の処理溶媒モデル: FLAT MODEL / Bsol: 7.145 Å2 / ksol: 0.245 e/Å3
原子変位パラメータBiso max: 341.04 Å2 / Biso mean: 73.5442 Å2 / Biso min: 2 Å2
Baniso -1Baniso -2Baniso -3
1--0.206 Å20 Å212.232 Å2
2---8.217 Å20 Å2
3---8.423 Å2
Refine analyze
FreeObs
Luzzati coordinate error0.6 Å0.55 Å
Luzzati d res low-5 Å
Luzzati sigma a1.3 Å1.24 Å
精密化ステップサイクル: LAST / 解像度: 2.9→50.01 Å
タンパク質核酸リガンド溶媒全体
原子数54612 4188 12 0 58812
拘束条件
Refine-IDタイプDev ideal数Dev ideal target
X-RAY DIFFRACTIONc_bond_d0.009604440
X-RAY DIFFRACTIONc_angle_deg1.41830880
X-RAY DIFFRACTIONc_dihedral_angle_d24.42390720
X-RAY DIFFRACTIONc_improper_angle_d1.033255000
X-RAY DIFFRACTIONc_mcbond_it5.482833204
X-RAY DIFFRACTIONc_mcangle_it8.973535208
X-RAY DIFFRACTIONc_scbond_it12.953211208
X-RAY DIFFRACTIONc_scangle_it17.9547736020
Refine LS restraints NCS
Ens-IDDom-IDRefine-IDRms dev Biso (Å2)Rms dev position (Å)Weight Biso Weight position
11X-RAY DIFFRACTION12.540.05432150
22X-RAY DIFFRACTION12.270.05532150
33X-RAY DIFFRACTION12.090.05632150
44X-RAY DIFFRACTION18.40.05432150
55X-RAY DIFFRACTION17.750.05632150
66X-RAY DIFFRACTION17.520.05232150
77X-RAY DIFFRACTION15.210.01832150
88X-RAY DIFFRACTION16.860.01932150
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 10

解像度 (Å)Rfactor RfreeNum. reflection Rfree% reflection Rfree (%)Rfactor RworkNum. reflection RworkRfactor Rfree errorRfactor allNum. reflection allNum. reflection obs% reflection obs (%)
2.9-30.498872109.840.4947660590.0060.4984732697326924.8
3-3.120.4632106700.4605946480.463310531810531835.6
3.12-3.270.4259142100.41841279240.42114213414213448.1
3.27-3.440.3792186170.36151673360.365118595318595362.9
3.44-3.650.3482238100.31662150050.319923881523881580.7
3.65-3.940.3156291960.27492611650.278429036129036198.2
3.94-4.330.2724295740.22682655790.230729515329515399.7
4.33-4.960.2199296250.17742652270.18229485229485299.5
4.96-6.250.2014294930.15462659980.160529549129549199.7
6.25-50.010.2517295400.22572665790.228229611929611999.4
Xplor file
Refine-IDSerial noParam fileTopol file
X-RAY DIFFRACTION1protein_rep.paramprotein.top
X-RAY DIFFRACTION2dna-rna_rep.paramdna-rna.top
X-RAY DIFFRACTION3ion.paramion.top

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万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

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