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Yorodumi- PDB-1smv: PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPL... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1smv | ||||||
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Title | PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS | ||||||
Components | SESBANIA MOSAIC VIRUS COAT PROTEIN | ||||||
Keywords | VIRUS / COAT PROTEIN (VIRAL) / Icosahedral virus | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Sesbania mosaic virus | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3 Å | ||||||
Authors | Bhuvaneshwari, M. / Murthy, M.R.N. | ||||||
Citation | Journal: Structure / Year: 1995 Title: Structure of sesbania mosaic virus at 3 A resolution. Authors: Bhuvaneshwari, M. / Subramanya, H.S. / Gopinath, K. / Savithri, H.S. / Nayudu, M.V. / Murthy, M.R. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Structure of Sesbania Mosaic Virus at 4.7 Angstroms Resolution and Partial Sequence of the Coat Protein Authors: Subramanya, H.S. / Gopinath, K. / Nayudu, M.V. / Savithri, H.S. / Murthy, M.R.N. #2: Journal: Curr.Sci. / Year: 1982 Title: Purification and Partial Characterization of Sesbania Mosaic Virus Authors: Sreenivasulu, P. / Nayudu, M.V. | ||||||
History |
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Remark 285 | THE ENTRY PRESENTED HERE DOES NOT CONTAIN THE COMPLETE CRYSTAL ASYMMETRIC UNIT. IN ADDITION, THE ...THE ENTRY PRESENTED HERE DOES NOT CONTAIN THE COMPLETE CRYSTAL ASYMMETRIC UNIT. IN ADDITION, THE COORDINATES ARE NOT PRESENTED IN THE STANDARD CRYSTAL FRAME. IN ORDER TO GENERATE THE FULL CRYSTAL AU, APPLY THE FOLLOWING TRANSFORMATION MATRIX OR MATRICES AND SELECTED BIOMT RECORDS TO THE COORDINATES, AS SHOWN BELOW. X0 1 0.209973 0.948239 0.238231 0.00000 X0 2 0.157347 -0.273260 0.948984 0.00000 X0 3 0.964962 -0.161777 -0.206580 0.00000 CRYSTAL AU = (X0) * (BIOMT 1-20) * CHAINS A,B,C |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1smv.cif.gz | 124.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1smv.ent.gz | 96.6 KB | Display | PDB format |
PDBx/mmJSON format | 1smv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1smv_validation.pdf.gz | 408.2 KB | Display | wwPDB validaton report |
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Full document | 1smv_full_validation.pdf.gz | 416.4 KB | Display | |
Data in XML | 1smv_validation.xml.gz | 14 KB | Display | |
Data in CIF | 1smv_validation.cif.gz | 20.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sm/1smv ftp://data.pdbj.org/pub/pdb/validation_reports/sm/1smv | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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3 |
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Unit cell |
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Symmetry | Point symmetry: (Hermann–Mauguin notation: 532 / Schoenflies symbol: I (icosahedral)) |
-Components
#1: Protein | Mass: 28578.496 Da / Num. of mol.: 3 / Source method: isolated from a natural source / Source: (natural) Sesbania mosaic virus / Genus: Sobemovirus / References: UniProt: Q9EB06 #2: Chemical | ChemComp-CA / |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal grow | *PLUS pH: 5.6 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||||||
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Components of the solutions | *PLUS
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-Data collection
Reflection | Resolution: 2.9→60 Å / Num. obs: 347170 / % possible obs: 70 % / Observed criterion σ(I): 1 |
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Reflection | *PLUS Rmerge(I) obs: 0.28 |
-Processing
Software |
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Refinement | Resolution: 3→10 Å / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 3→10 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Version: 3.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 3 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |