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- PDB-4v99: The Crystallographic Structure of Panicum Mosaic Virus -

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Basic information

Entry
Database: PDB / ID: 4v99
TitleThe Crystallographic Structure of Panicum Mosaic Virus
Components
  • 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
  • Capsid proteinCapsid
KeywordsVIRUS/RNA / icosahedral virus / tombusviridae / RNA hairpin / virus coat protein / Swiss jelly roll fold / VIRUS-RNA complex
Function / homologyIcosahedral viral capsid protein, S domain / Viral coat protein (S domain) / T=3 icosahedral viral capsid / Viral coat protein subunit / structural molecule activity / RNA / RNA (> 10) / Capsid protein
Function and homology information
Biological speciesPanicum mosaic virus
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å
AuthorsMakino, D.L. / Larson, S.B. / McPherson, A.
Citation
Journal: J.Struct.Biol. / Year: 2013
Title: The crystallographic structure of Panicum Mosaic Virus (PMV).
Authors: Makino, D.L. / Larson, S.B. / McPherson, A.
#1: Journal: Acta Crystallogr.,Sect.D / Year: 2005
Title: Preliminary analysis of crystals of panicum mosaic virus (PMV) by X-ray diffraction and atomic force microscopy.
Authors: Makino, D.L. / Larson, S.B. / McPherson, A.
History
DepositionJul 4, 2012Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jul 9, 2014Provider: repository / Type: Initial release
SupersessionDec 10, 2014ID: 4FY1, 4FY2, 4FY3, 4FY4, 4FY5, 4FY6, 4FY7, 4FY8, 4FY9, 4FYA
Revision 1.1Dec 10, 2014Group: Other
Revision 1.2Sep 20, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
AA: Capsid protein
AB: Capsid protein
AC: Capsid protein
AD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AF: Capsid protein
AG: Capsid protein
AH: Capsid protein
AI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AK: Capsid protein
AL: Capsid protein
AM: Capsid protein
AN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AP: Capsid protein
AQ: Capsid protein
AR: Capsid protein
AS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AU: Capsid protein
AV: Capsid protein
AW: Capsid protein
AX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AZ: Capsid protein
Aa: Capsid protein
Ab: Capsid protein
Ac: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ae: Capsid protein
Af: Capsid protein
Ag: Capsid protein
Ah: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Aj: Capsid protein
Ak: Capsid protein
Al: Capsid protein
Am: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ao: Capsid protein
Ap: Capsid protein
Aq: Capsid protein
Ar: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
At: Capsid protein
Au: Capsid protein
Av: Capsid protein
Aw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ay: Capsid protein
Az: Capsid protein
A1: Capsid protein
A2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
A4: Capsid protein
A5: Capsid protein
A6: Capsid protein
A7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BA: Capsid protein
BB: Capsid protein
BC: Capsid protein
BD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BF: Capsid protein
BG: Capsid protein
BH: Capsid protein
BI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BK: Capsid protein
BL: Capsid protein
BM: Capsid protein
BN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BP: Capsid protein
BQ: Capsid protein
BR: Capsid protein
BS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BU: Capsid protein
BV: Capsid protein
BW: Capsid protein
BX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BZ: Capsid protein
Ba: Capsid protein
Bb: Capsid protein
Bc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Be: Capsid protein
Bf: Capsid protein
Bg: Capsid protein
Bh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bj: Capsid protein
Bk: Capsid protein
Bl: Capsid protein
Bm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bo: Capsid protein
Bp: Capsid protein
Bq: Capsid protein
Br: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bt: Capsid protein
Bu: Capsid protein
Bv: Capsid protein
Bw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
By: Capsid protein
Bz: Capsid protein
B1: Capsid protein
B2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
B4: Capsid protein
B5: Capsid protein
B6: Capsid protein
B7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CA: Capsid protein
CB: Capsid protein
CC: Capsid protein
CD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CF: Capsid protein
CG: Capsid protein
CH: Capsid protein
CI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CK: Capsid protein
CL: Capsid protein
CM: Capsid protein
CN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CP: Capsid protein
CQ: Capsid protein
CR: Capsid protein
CS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CU: Capsid protein
CV: Capsid protein
CW: Capsid protein
CX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CZ: Capsid protein
Ca: Capsid protein
Cb: Capsid protein
Cc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ce: Capsid protein
Cf: Capsid protein
Cg: Capsid protein
Ch: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cj: Capsid protein
Ck: Capsid protein
Cl: Capsid protein
Cm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Co: Capsid protein
Cp: Capsid protein
Cq: Capsid protein
Cr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ct: Capsid protein
Cu: Capsid protein
Cv: Capsid protein
Cw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cy: Capsid protein
Cz: Capsid protein
C1: Capsid protein
C2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
C4: Capsid protein
C5: Capsid protein
C6: Capsid protein
C7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DA: Capsid protein
DB: Capsid protein
DC: Capsid protein
DD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DF: Capsid protein
DG: Capsid protein
DH: Capsid protein
DI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DK: Capsid protein
DL: Capsid protein
DM: Capsid protein
DN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DP: Capsid protein
DQ: Capsid protein
DR: Capsid protein
DS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DU: Capsid protein
DV: Capsid protein
DW: Capsid protein
DX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DZ: Capsid protein
Da: Capsid protein
Db: Capsid protein
Dc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
De: Capsid protein
Df: Capsid protein
Dg: Capsid protein
Dh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dj: Capsid protein
Dk: Capsid protein
Dl: Capsid protein
Dm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Do: Capsid protein
Dp: Capsid protein
Dq: Capsid protein
Dr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dt: Capsid protein
Du: Capsid protein
Dv: Capsid protein
Dw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dy: Capsid protein
Dz: Capsid protein
D1: Capsid protein
D2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
D4: Capsid protein
D5: Capsid protein
D6: Capsid protein
D7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EA: Capsid protein
EB: Capsid protein
EC: Capsid protein
ED: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EF: Capsid protein
EG: Capsid protein
EH: Capsid protein
EI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EK: Capsid protein
EL: Capsid protein
EM: Capsid protein
EN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EP: Capsid protein
EQ: Capsid protein
ER: Capsid protein
ES: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EU: Capsid protein
EV: Capsid protein
EW: Capsid protein
EX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EZ: Capsid protein
Ea: Capsid protein
Eb: Capsid protein
Ec: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ee: Capsid protein
Ef: Capsid protein
Eg: Capsid protein
Eh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ej: Capsid protein
Ek: Capsid protein
El: Capsid protein
Em: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Eo: Capsid protein
Ep: Capsid protein
Eq: Capsid protein
Er: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Et: Capsid protein
Eu: Capsid protein
Ev: Capsid protein
Ew: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ey: Capsid protein
Ez: Capsid protein
E1: Capsid protein
E2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
E4: Capsid protein
E5: Capsid protein
E6: Capsid protein
E7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FA: Capsid protein
FB: Capsid protein
FC: Capsid protein
FD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FF: Capsid protein
FG: Capsid protein
FH: Capsid protein
FI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FK: Capsid protein
FL: Capsid protein
FM: Capsid protein
FN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FP: Capsid protein
FQ: Capsid protein
FR: Capsid protein
FS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FU: Capsid protein
FV: Capsid protein
FW: Capsid protein
FX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FZ: Capsid protein
Fa: Capsid protein
Fb: Capsid protein
Fc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fe: Capsid protein
Ff: Capsid protein
Fg: Capsid protein
Fh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fj: Capsid protein
Fk: Capsid protein
Fl: Capsid protein
Fm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fo: Capsid protein
Fp: Capsid protein
Fq: Capsid protein
Fr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ft: Capsid protein
Fu: Capsid protein
Fv: Capsid protein
Fw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fy: Capsid protein
Fz: Capsid protein
F1: Capsid protein
F2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
F4: Capsid protein
F5: Capsid protein
F6: Capsid protein
F7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GA: Capsid protein
GB: Capsid protein
GC: Capsid protein
GD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GF: Capsid protein
GG: Capsid protein
GH: Capsid protein
GI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GK: Capsid protein
GL: Capsid protein
GM: Capsid protein
GN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GP: Capsid protein
GQ: Capsid protein
GR: Capsid protein
GS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GU: Capsid protein
GV: Capsid protein
GW: Capsid protein
GX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GZ: Capsid protein
Ga: Capsid protein
Gb: Capsid protein
Gc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ge: Capsid protein
Gf: Capsid protein
Gg: Capsid protein
Gh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gj: Capsid protein
Gk: Capsid protein
Gl: Capsid protein
Gm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Go: Capsid protein
Gp: Capsid protein
Gq: Capsid protein
Gr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gt: Capsid protein
Gu: Capsid protein
Gv: Capsid protein
Gw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gy: Capsid protein
Gz: Capsid protein
G1: Capsid protein
G2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
G4: Capsid protein
G5: Capsid protein
G6: Capsid protein
G7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HA: Capsid protein
HB: Capsid protein
HC: Capsid protein
HD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HF: Capsid protein
HG: Capsid protein
HH: Capsid protein
HI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HK: Capsid protein
HL: Capsid protein
HM: Capsid protein
HN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HP: Capsid protein
HQ: Capsid protein
HR: Capsid protein
HS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HU: Capsid protein
HV: Capsid protein
HW: Capsid protein
HX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HZ: Capsid protein
Ha: Capsid protein
Hb: Capsid protein
Hc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
He: Capsid protein
Hf: Capsid protein
Hg: Capsid protein
Hh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hj: Capsid protein
Hk: Capsid protein
Hl: Capsid protein
Hm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ho: Capsid protein
Hp: Capsid protein
Hq: Capsid protein
Hr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ht: Capsid protein
Hu: Capsid protein
Hv: Capsid protein
Hw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hy: Capsid protein
Hz: Capsid protein
H1: Capsid protein
H2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
H4: Capsid protein
H5: Capsid protein
H6: Capsid protein
H7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IA: Capsid protein
IB: Capsid protein
IC: Capsid protein
ID: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IF: Capsid protein
IG: Capsid protein
IH: Capsid protein
II: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IK: Capsid protein
IL: Capsid protein
IM: Capsid protein
IN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IP: Capsid protein
IQ: Capsid protein
IR: Capsid protein
IS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IU: Capsid protein
IV: Capsid protein
IW: Capsid protein
IX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IZ: Capsid protein
Ia: Capsid protein
Ib: Capsid protein
Ic: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ie: Capsid protein
If: Capsid protein
Ig: Capsid protein
Ih: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ij: Capsid protein
Ik: Capsid protein
Il: Capsid protein
Im: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Io: Capsid protein
Ip: Capsid protein
Iq: Capsid protein
Ir: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
It: Capsid protein
Iu: Capsid protein
Iv: Capsid protein
Iw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Iy: Capsid protein
Iz: Capsid protein
I1: Capsid protein
I2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
I4: Capsid protein
I5: Capsid protein
I6: Capsid protein
I7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JA: Capsid protein
JB: Capsid protein
JC: Capsid protein
JD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JF: Capsid protein
JG: Capsid protein
JH: Capsid protein
JI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JK: Capsid protein
JL: Capsid protein
JM: Capsid protein
JN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JP: Capsid protein
JQ: Capsid protein
JR: Capsid protein
JS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JU: Capsid protein
JV: Capsid protein
JW: Capsid protein
JX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JZ: Capsid protein
Ja: Capsid protein
Jb: Capsid protein
Jc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Je: Capsid protein
Jf: Capsid protein
Jg: Capsid protein
Jh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jj: Capsid protein
Jk: Capsid protein
Jl: Capsid protein
Jm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jo: Capsid protein
Jp: Capsid protein
Jq: Capsid protein
Jr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jt: Capsid protein
Ju: Capsid protein
Jv: Capsid protein
Jw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jy: Capsid protein
Jz: Capsid protein
J1: Capsid protein
J2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
J4: Capsid protein
J5: Capsid protein
J6: Capsid protein
J7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
hetero molecules


Theoretical massNumber of molelcules
Total (without water)10,135,475600
Polymers10,130,666480
Non-polymers4,809120
Water0
1
AA: Capsid protein
AB: Capsid protein
AC: Capsid protein
AD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AF: Capsid protein
AG: Capsid protein
AH: Capsid protein
AI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AK: Capsid protein
AL: Capsid protein
AM: Capsid protein
AN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AP: Capsid protein
AQ: Capsid protein
AR: Capsid protein
AS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AU: Capsid protein
AV: Capsid protein
AW: Capsid protein
AX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
AZ: Capsid protein
Aa: Capsid protein
Ab: Capsid protein
Ac: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ae: Capsid protein
Af: Capsid protein
Ag: Capsid protein
Ah: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Aj: Capsid protein
Ak: Capsid protein
Al: Capsid protein
Am: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ao: Capsid protein
Ap: Capsid protein
Aq: Capsid protein
Ar: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
At: Capsid protein
Au: Capsid protein
Av: Capsid protein
Aw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ay: Capsid protein
Az: Capsid protein
A1: Capsid protein
A2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
A4: Capsid protein
A5: Capsid protein
A6: Capsid protein
A7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BA: Capsid protein
BB: Capsid protein
BC: Capsid protein
BD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BF: Capsid protein
BG: Capsid protein
BH: Capsid protein
BI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BK: Capsid protein
BL: Capsid protein
BM: Capsid protein
BN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BP: Capsid protein
BQ: Capsid protein
BR: Capsid protein
BS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BU: Capsid protein
BV: Capsid protein
BW: Capsid protein
BX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
BZ: Capsid protein
Ba: Capsid protein
Bb: Capsid protein
Bc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Be: Capsid protein
Bf: Capsid protein
Bg: Capsid protein
Bh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bj: Capsid protein
Bk: Capsid protein
Bl: Capsid protein
Bm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bo: Capsid protein
Bp: Capsid protein
Bq: Capsid protein
Br: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Bt: Capsid protein
Bu: Capsid protein
Bv: Capsid protein
Bw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
By: Capsid protein
Bz: Capsid protein
B1: Capsid protein
B2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
B4: Capsid protein
B5: Capsid protein
B6: Capsid protein
B7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CA: Capsid protein
CB: Capsid protein
CC: Capsid protein
CD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CF: Capsid protein
CG: Capsid protein
CH: Capsid protein
CI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CK: Capsid protein
CL: Capsid protein
CM: Capsid protein
CN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CP: Capsid protein
CQ: Capsid protein
CR: Capsid protein
CS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CU: Capsid protein
CV: Capsid protein
CW: Capsid protein
CX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
CZ: Capsid protein
Ca: Capsid protein
Cb: Capsid protein
Cc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ce: Capsid protein
Cf: Capsid protein
Cg: Capsid protein
Ch: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cj: Capsid protein
Ck: Capsid protein
Cl: Capsid protein
Cm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Co: Capsid protein
Cp: Capsid protein
Cq: Capsid protein
Cr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ct: Capsid protein
Cu: Capsid protein
Cv: Capsid protein
Cw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Cy: Capsid protein
Cz: Capsid protein
C1: Capsid protein
C2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
C4: Capsid protein
C5: Capsid protein
C6: Capsid protein
C7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DA: Capsid protein
DB: Capsid protein
DC: Capsid protein
DD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DF: Capsid protein
DG: Capsid protein
DH: Capsid protein
DI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DK: Capsid protein
DL: Capsid protein
DM: Capsid protein
DN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DP: Capsid protein
DQ: Capsid protein
DR: Capsid protein
DS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DU: Capsid protein
DV: Capsid protein
DW: Capsid protein
DX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
DZ: Capsid protein
Da: Capsid protein
Db: Capsid protein
Dc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
De: Capsid protein
Df: Capsid protein
Dg: Capsid protein
Dh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dj: Capsid protein
Dk: Capsid protein
Dl: Capsid protein
Dm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Do: Capsid protein
Dp: Capsid protein
Dq: Capsid protein
Dr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dt: Capsid protein
Du: Capsid protein
Dv: Capsid protein
Dw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Dy: Capsid protein
Dz: Capsid protein
D1: Capsid protein
D2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
D4: Capsid protein
D5: Capsid protein
D6: Capsid protein
D7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EA: Capsid protein
EB: Capsid protein
EC: Capsid protein
ED: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EF: Capsid protein
EG: Capsid protein
EH: Capsid protein
EI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EK: Capsid protein
EL: Capsid protein
EM: Capsid protein
EN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EP: Capsid protein
EQ: Capsid protein
ER: Capsid protein
ES: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EU: Capsid protein
EV: Capsid protein
EW: Capsid protein
EX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
EZ: Capsid protein
Ea: Capsid protein
Eb: Capsid protein
Ec: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ee: Capsid protein
Ef: Capsid protein
Eg: Capsid protein
Eh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ej: Capsid protein
Ek: Capsid protein
El: Capsid protein
Em: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Eo: Capsid protein
Ep: Capsid protein
Eq: Capsid protein
Er: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Et: Capsid protein
Eu: Capsid protein
Ev: Capsid protein
Ew: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ey: Capsid protein
Ez: Capsid protein
E1: Capsid protein
E2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
E4: Capsid protein
E5: Capsid protein
E6: Capsid protein
E7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
hetero molecules


Theoretical massNumber of molelcules
Total (without water)5,067,737300
Polymers5,065,333240
Non-polymers2,40560
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
FA: Capsid protein
FB: Capsid protein
FC: Capsid protein
FD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FF: Capsid protein
FG: Capsid protein
FH: Capsid protein
FI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FK: Capsid protein
FL: Capsid protein
FM: Capsid protein
FN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FP: Capsid protein
FQ: Capsid protein
FR: Capsid protein
FS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FU: Capsid protein
FV: Capsid protein
FW: Capsid protein
FX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
FZ: Capsid protein
Fa: Capsid protein
Fb: Capsid protein
Fc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fe: Capsid protein
Ff: Capsid protein
Fg: Capsid protein
Fh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fj: Capsid protein
Fk: Capsid protein
Fl: Capsid protein
Fm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fo: Capsid protein
Fp: Capsid protein
Fq: Capsid protein
Fr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ft: Capsid protein
Fu: Capsid protein
Fv: Capsid protein
Fw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Fy: Capsid protein
Fz: Capsid protein
F1: Capsid protein
F2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
F4: Capsid protein
F5: Capsid protein
F6: Capsid protein
F7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GA: Capsid protein
GB: Capsid protein
GC: Capsid protein
GD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GF: Capsid protein
GG: Capsid protein
GH: Capsid protein
GI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GK: Capsid protein
GL: Capsid protein
GM: Capsid protein
GN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GP: Capsid protein
GQ: Capsid protein
GR: Capsid protein
GS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GU: Capsid protein
GV: Capsid protein
GW: Capsid protein
GX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
GZ: Capsid protein
Ga: Capsid protein
Gb: Capsid protein
Gc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ge: Capsid protein
Gf: Capsid protein
Gg: Capsid protein
Gh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gj: Capsid protein
Gk: Capsid protein
Gl: Capsid protein
Gm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Go: Capsid protein
Gp: Capsid protein
Gq: Capsid protein
Gr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gt: Capsid protein
Gu: Capsid protein
Gv: Capsid protein
Gw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Gy: Capsid protein
Gz: Capsid protein
G1: Capsid protein
G2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
G4: Capsid protein
G5: Capsid protein
G6: Capsid protein
G7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HA: Capsid protein
HB: Capsid protein
HC: Capsid protein
HD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HF: Capsid protein
HG: Capsid protein
HH: Capsid protein
HI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HK: Capsid protein
HL: Capsid protein
HM: Capsid protein
HN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HP: Capsid protein
HQ: Capsid protein
HR: Capsid protein
HS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HU: Capsid protein
HV: Capsid protein
HW: Capsid protein
HX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
HZ: Capsid protein
Ha: Capsid protein
Hb: Capsid protein
Hc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
He: Capsid protein
Hf: Capsid protein
Hg: Capsid protein
Hh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hj: Capsid protein
Hk: Capsid protein
Hl: Capsid protein
Hm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ho: Capsid protein
Hp: Capsid protein
Hq: Capsid protein
Hr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ht: Capsid protein
Hu: Capsid protein
Hv: Capsid protein
Hw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Hy: Capsid protein
Hz: Capsid protein
H1: Capsid protein
H2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
H4: Capsid protein
H5: Capsid protein
H6: Capsid protein
H7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IA: Capsid protein
IB: Capsid protein
IC: Capsid protein
ID: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IF: Capsid protein
IG: Capsid protein
IH: Capsid protein
II: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IK: Capsid protein
IL: Capsid protein
IM: Capsid protein
IN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IP: Capsid protein
IQ: Capsid protein
IR: Capsid protein
IS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IU: Capsid protein
IV: Capsid protein
IW: Capsid protein
IX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
IZ: Capsid protein
Ia: Capsid protein
Ib: Capsid protein
Ic: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ie: Capsid protein
If: Capsid protein
Ig: Capsid protein
Ih: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Ij: Capsid protein
Ik: Capsid protein
Il: Capsid protein
Im: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Io: Capsid protein
Ip: Capsid protein
Iq: Capsid protein
Ir: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
It: Capsid protein
Iu: Capsid protein
Iv: Capsid protein
Iw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Iy: Capsid protein
Iz: Capsid protein
I1: Capsid protein
I2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
I4: Capsid protein
I5: Capsid protein
I6: Capsid protein
I7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JA: Capsid protein
JB: Capsid protein
JC: Capsid protein
JD: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JF: Capsid protein
JG: Capsid protein
JH: Capsid protein
JI: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JK: Capsid protein
JL: Capsid protein
JM: Capsid protein
JN: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JP: Capsid protein
JQ: Capsid protein
JR: Capsid protein
JS: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JU: Capsid protein
JV: Capsid protein
JW: Capsid protein
JX: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
JZ: Capsid protein
Ja: Capsid protein
Jb: Capsid protein
Jc: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Je: Capsid protein
Jf: Capsid protein
Jg: Capsid protein
Jh: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jj: Capsid protein
Jk: Capsid protein
Jl: Capsid protein
Jm: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jo: Capsid protein
Jp: Capsid protein
Jq: Capsid protein
Jr: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jt: Capsid protein
Ju: Capsid protein
Jv: Capsid protein
Jw: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
Jy: Capsid protein
Jz: Capsid protein
J1: Capsid protein
J2: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
J4: Capsid protein
J5: Capsid protein
J6: Capsid protein
J7: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'
hetero molecules


Theoretical massNumber of molelcules
Total (without water)5,067,737300
Polymers5,065,333240
Non-polymers2,40560
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)411.740, 403.900, 412.460
Angle α, β, γ (deg.)90.000, 89.650, 90.000
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-ID
11
22
33
44
55
66
77
88
/ NCS ensembles :
ID
1
2
3
4
5
6
7
8

-
Components

#1: Protein ...
Capsid protein / Capsid / Coat protein / p26


Mass: 26390.064 Da / Num. of mol.: 360 / Source method: isolated from a natural source / Source: (natural) Panicum mosaic virus / Strain: United States/Kansas 109S / References: UniProt: P89036
#2: RNA chain ...
5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'


Mass: 5252.021 Da / Num. of mol.: 120 / Source method: isolated from a natural source / Details: arbitrary RNA hairpin / Source: (natural) Panicum mosaic virus / Strain: United States/Kansas 109S
#3: Chemical...
ChemComp-CA / CALCIUM ION


Mass: 40.078 Da / Num. of mol.: 120 / Source method: obtained synthetically / Formula: Ca

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.79 Å3/Da / Density % sol: 56 %
Crystal growTemperature: 291 K / Method: vapor diffusion, sitting drop / pH: 5.5
Details: 10% PEG400, 0.1 M citric acid, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: ALS / Beamline: 5.0.2 / Wavelength: 1 Å
DetectorType: ADSC QUANTUM 210 / Detector: CCD / Date: Feb 28, 2004
RadiationMonochromator: liquid nitrogen cooled, double-crystal Si(111)
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 2.71→50.01 Å / Num. obs: 2279719 / % possible obs: 63 % / Redundancy: 3.14 % / Biso Wilson estimate: 73.7 Å2 / Rmerge(I) obs: 0.136 / Χ2: 0.97 / Net I/σ(I): 6.8 / Scaling rejects: 146129
Reflection shell

Diffraction-ID: 1

Resolution (Å)Redundancy (%)Rmerge(I) obsMean I/σ(I) obsNum. measured allNum. unique allΧ2% possible all
2.71-2.812.260.3462.539843176070.844.9
2.81-2.922.450.3382.7142632582730.8316.1
2.92-3.052.560.3192.92621831021620.8528.3
3.05-3.222.670.2993.34118541529620.9242.3
3.22-3.422.810.2793.66107902146150.9959.4
3.42-3.683.020.254.1893552292111180.8
3.68-4.053.310.2134.812130633583921.0499.1
4.05-4.643.360.1476.512455113603771.0199.6
4.64-5.843.370.1118.512529063608010.9699.6
5.84-50.013.340.06513.312340963624190.9199.6

-
Processing

Software
NameVersionClassificationNB
d*TREK9.2Ldata scaling
CNS1.3refinement
PDB_EXTRACT3.006data extraction
ADSCQuantumdata collection
d*TREKdata reduction
CNS1.1phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: PDB ENTRY 1C8N

1c8n


Resolution: 2.9→50.01 Å / Rfactor Rfree error: 0.001 / Occupancy max: 1 / Occupancy min: 1 / Data cutoff high absF: 55888 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber / Details: BULK SOLVENT MODEL USED
RfactorNum. reflection% reflectionSelection details
Rfree0.285 221945 10 %RANDOM
Rwork0.251 ---
all0.255 2217465 --
obs0.255 2217465 74.9 %-
Solvent computationSolvent model: FLAT MODEL / Bsol: 7.145 Å2 / ksol: 0.245 e/Å3
Displacement parametersBiso max: 341.04 Å2 / Biso mean: 73.5442 Å2 / Biso min: 2 Å2
Baniso -1Baniso -2Baniso -3
1--0.206 Å20 Å212.232 Å2
2---8.217 Å20 Å2
3---8.423 Å2
Refine analyze
FreeObs
Luzzati coordinate error0.6 Å0.55 Å
Luzzati d res low-5 Å
Luzzati sigma a1.3 Å1.24 Å
Refinement stepCycle: LAST / Resolution: 2.9→50.01 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms54612 4188 12 0 58812
Refine LS restraints
Refine-IDTypeDev idealNumberDev ideal target
X-RAY DIFFRACTIONc_bond_d0.009604440
X-RAY DIFFRACTIONc_angle_deg1.41830880
X-RAY DIFFRACTIONc_dihedral_angle_d24.42390720
X-RAY DIFFRACTIONc_improper_angle_d1.033255000
X-RAY DIFFRACTIONc_mcbond_it5.482833204
X-RAY DIFFRACTIONc_mcangle_it8.973535208
X-RAY DIFFRACTIONc_scbond_it12.953211208
X-RAY DIFFRACTIONc_scangle_it17.9547736020
Refine LS restraints NCS
Ens-IDDom-IDRefine-IDRms dev Biso (Å2)Rms dev position (Å)Weight Biso Weight position
11X-RAY DIFFRACTION12.540.05432150
22X-RAY DIFFRACTION12.270.05532150
33X-RAY DIFFRACTION12.090.05632150
44X-RAY DIFFRACTION18.40.05432150
55X-RAY DIFFRACTION17.750.05632150
66X-RAY DIFFRACTION17.520.05232150
77X-RAY DIFFRACTION15.210.01832150
88X-RAY DIFFRACTION16.860.01932150
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 10

Resolution (Å)Rfactor RfreeNum. reflection Rfree% reflection Rfree (%)Rfactor RworkNum. reflection RworkRfactor Rfree errorRfactor allNum. reflection allNum. reflection obs% reflection obs (%)
2.9-30.498872109.840.4947660590.0060.4984732697326924.8
3-3.120.4632106700.4605946480.463310531810531835.6
3.12-3.270.4259142100.41841279240.42114213414213448.1
3.27-3.440.3792186170.36151673360.365118595318595362.9
3.44-3.650.3482238100.31662150050.319923881523881580.7
3.65-3.940.3156291960.27492611650.278429036129036198.2
3.94-4.330.2724295740.22682655790.230729515329515399.7
4.33-4.960.2199296250.17742652270.18229485229485299.5
4.96-6.250.2014294930.15462659980.160529549129549199.7
6.25-50.010.2517295400.22572665790.228229611929611999.4
Xplor file
Refine-IDSerial noParam fileTopol file
X-RAY DIFFRACTION1protein_rep.paramprotein.top
X-RAY DIFFRACTION2dna-rna_rep.paramdna-rna.top
X-RAY DIFFRACTION3ion.paramion.top

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