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Yorodumi- PDB-1tnv: CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tnv | ||||||
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Title | CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION | ||||||
Components |
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Keywords | VIRUS / Icosahedral virus | ||||||
Biological species | unidentified tobacco necrosis virus | ||||||
Method | X-RAY DIFFRACTION / Resolution: 5 Å | ||||||
Authors | Tsukihara, T. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1994 Title: Crystal structural analysis of tobacco necrosis virus at 5 A resolution. Authors: Bando, M. / Morimoto, Y. / Sato, T. / Tsukihara, T. #1: Journal: Acta Crystallogr.,Sect.B / Year: 1990 Title: Symmetry and Subunit Arrangement of Tobacco Necrosis Virus Authors: Tsukihara, T. / Yokota, Y. / Koyama, T. / Fukuyama, K. / Matsubara, H. #2: Journal: J.Mol.Biol. / Year: 1987 Title: Crystallization and Preliminary X-Ray Diffraction Studies of Tobacco Necrosis Virus Authors: Fukuyama, K. / Hirota, S. / Tsukihara, T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tnv.cif.gz | 55.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tnv.ent.gz | 36.3 KB | Display | PDB format |
PDBx/mmJSON format | 1tnv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tn/1tnv ftp://data.pdbj.org/pub/pdb/validation_reports/tn/1tnv | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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Unit cell |
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Atom site foot note | 1: UNK B 111 - UNK B 112 OMEGA = 211.95 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION | ||||||||||||||||||
Symmetry | Point symmetry: (Hermann–Mauguin notation: 532 / Schoenflies symbol: I (icosahedral)) | ||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
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-Components
#1: Protein | Mass: 15847.501 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) unidentified tobacco necrosis virus / Genus: Necrovirus / Organ: BEAN #2: Protein | | Mass: 17889.996 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) unidentified tobacco necrosis virus / Genus: Necrovirus / Organ: BEAN Sequence details | THE PRIMARY SEQUENCE OF TNV IS NOT YET KNOWN; THEREFORE ALL RESIDUES WERE MODELED AS GLY AND ARE ...THE PRIMARY SEQUENCE OF TNV IS NOT YET KNOWN; THEREFORE ALL RESIDUES WERE MODELED AS GLY AND ARE REPRESENTE | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal grow | *PLUS pH: 6 / Method: microdialysis |
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Components of the solutions | *PLUS Conc.: 0.4 M / Common name: sodium phosphate |
-Data collection
Reflection | *PLUS Highest resolution: 5 Å / Lowest resolution: 100 Å / Num. all: 29161 / Num. obs: 24127 / Observed criterion σ(F): 5 / Num. measured all: 90251 / Rmerge(I) obs: 0.115 |
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Reflection shell | *PLUS Highest resolution: 5 Å / Lowest resolution: 6 Å / Num. possible: 12028 / Num. measured obs: 9515 |
-Processing
Software | Name: NCS / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 5 Å
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Software | *PLUS Name: NCS / Classification: refinement | ||||||||||||
Refinement | *PLUS Rfactor obs: 0.184 / Rfactor Rwork: 0.184 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |