COMPOUND THIS FILE, 1VOQ, CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL ...COMPOUND THIS FILE, 1VOQ, CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND ARE DEPOSITED UNDER: 70S RIBOSOME ONE: 1VOQ (30S SUBUNIT), 1VOR (50S SUBUNIT) 70S RIBOSOME TWO: 1VOS (30S SUBUNIT), 1VOU (50S SUBUNIT) 70S RIBOSOME THREE: 1VOV (30S SUBUNIT), 1VOW (50S SUBUNIT) 70S RIBOSOME FOUR: 1VOX (30S SUBUNIT), 1VOY (50S SUBUNIT) 70S RIBOSOME FIVE: 1VOZ (30S SUBUNIT), 1VP0 (50S SUBUNIT)
Remark 999
SEQUENCE The 30S subunit is modelled based on 1PNS which are derived mainly from 1J5E, the T. ...SEQUENCE The 30S subunit is modelled based on 1PNS which are derived mainly from 1J5E, the T. thermophilus 30S subunit, with modifications to the rRNA to make it match E. coli insertions and deletions. The sequence of this subunit represent that of pdb entry, 1J5E. As a result, no dbref was provided. Some residues are not at link distance. Distance of O3*-P bond is 3.20 for residue (A A 919 ) and residue (A U 920 ). Distance of O3*-P bond is 3.21 for residue (A U 1393 ) and residue (A A 1394 ). Distance of O3*-P bond is 5.27 for residue (A G 1443 ) and residue (A U 1445 ). Distance of O3*-P bond is 6.64 for residue (A G 1458 ) and residue (A A 1460 ). Distance of C-N bond is 5.58 for residue (L SER 22 ) and residue (L LYS 23 ). Distance of C-N bond is 4.55 for residue (M GLY 89 ) and residue (M LEU 90 ). The short contacts listed at remark 500 may not be complete since this file only represents one tenth of the entire crystal structure.
AA: 16S ribosomal RNA AB: 30S ribosomal protein S2 AC: 30S ribosomal protein S3 AD: 30S ribosomal protein S4 AE: 30S ribosomal protein S5 AF: 30S ribosomal protein S6 AG: 30S ribosomal protein S7 AH: 30S ribosomal protein S8 AI: 30S ribosomal protein S9 AJ: 30S ribosomal protein S10 AK: 30S ribosomal protein S11 AL: 30S ribosomal protein S12 AM: 30S ribosomal protein S13 AN: 30S ribosomal protein S14 AO: 30S ribosomal protein S15 AP: 30S ribosomal protein S16 AQ: 30S ribosomal protein S17 AR: 30S ribosomal protein S18 AS: 30S ribosomal protein S19 AT: 30S ribosomal protein S20 Aa: protein Y BB: 23S RIBOSOMAL RNA BA: 5S RIBOSOMAL RNA BD: 50S ribosomal protein L2 BE: 50S ribosomal protein L3 BF: 50S ribosomal protein L4 BG: 50S ribosomal protein L5 BH: 50S ribosomal protein L6 BI: 50S ribosomal protein L9 BJ: 50S ribosomal protein L11 BK: 50S ribosomal protein L13 BL: 50S ribosomal protein L14 BM: 50S ribosomal protein L15 BN: 50S ribosomal protein L16 BO: 50S ribosomal protein L17 BP: 50S ribosomal protein L18 BQ: 50S ribosomal protein L19 BR: 50S ribosomal protein L20 BS: 50S ribosomal protein L21 BT: 50S ribosomal protein L22 BU: 50S ribosomal protein L23 BV: 50S ribosomal protein L24 BW: general stress protein Ctc BX: 50S ribosomal protein L27 BY: 50S ribosomal protein L29 BZ: 50S ribosomal protein L30 B1: 50S ribosomal protein L31 B2: 50S ribosomal protein L32 B3: 50S ribosomal protein L33 B4: 50S ribosomal protein L34 B5: 50S ribosomal protein L35 B6: 50S ribosomal protein L36 B7: 50S ribosomal protein L1P CA: 16S ribosomal RNA CB: 30S ribosomal protein S2 CC: 30S ribosomal protein S3 CD: 30S ribosomal protein S4 CE: 30S ribosomal protein S5 CF: 30S ribosomal protein S6 CG: 30S ribosomal protein S7 CH: 30S ribosomal protein S8 CI: 30S ribosomal protein S9 CJ: 30S ribosomal protein S10 CK: 30S ribosomal protein S11 CL: 30S ribosomal protein S12 CM: 30S ribosomal protein S13 CN: 30S ribosomal protein S14 CO: 30S ribosomal protein S15 CP: 30S ribosomal protein S16 CQ: 30S ribosomal protein S17 CR: 30S ribosomal protein S18 CS: 30S ribosomal protein S19 CT: 30S ribosomal protein S20 Ca: protein Y DB: 23S RIBOSOMAL RNA DA: 5S RIBOSOMAL RNA DD: 50S ribosomal protein L2 DE: 50S ribosomal protein L3 DF: 50S ribosomal protein L4 DG: 50S ribosomal protein L5 DH: 50S ribosomal protein L6 DI: 50S ribosomal protein L9 DJ: 50S ribosomal protein L11 DK: 50S ribosomal protein L13 DL: 50S ribosomal protein L14 DM: 50S ribosomal protein L15 DN: 50S ribosomal protein L16 DO: 50S ribosomal protein L17 DP: 50S ribosomal protein L18 DQ: 50S ribosomal protein L19 DR: 50S ribosomal protein L20 DS: 50S ribosomal protein L21 DT: 50S ribosomal protein L22 DU: 50S ribosomal protein L23 DV: 50S ribosomal protein L24 DW: general stress protein Ctc DX: 50S ribosomal protein L27 DY: 50S ribosomal protein L29 DZ: 50S ribosomal protein L30 D1: 50S ribosomal protein L31 D2: 50S ribosomal protein L32 D3: 50S ribosomal protein L33 D4: 50S ribosomal protein L34 D5: 50S ribosomal protein L35 D6: 50S ribosomal protein L36 D7: 50S ribosomal protein L1P EA: 16S ribosomal RNA EB: 30S ribosomal protein S2 EC: 30S ribosomal protein S3 ED: 30S ribosomal protein S4 EE: 30S ribosomal protein S5 EF: 30S ribosomal protein S6 EG: 30S ribosomal protein S7 EH: 30S ribosomal protein S8 EI: 30S ribosomal protein S9 EJ: 30S ribosomal protein S10 EK: 30S ribosomal protein S11 EL: 30S ribosomal protein S12 EM: 30S ribosomal protein S13 EN: 30S ribosomal protein S14 EO: 30S ribosomal protein S15 EP: 30S ribosomal protein S16 EQ: 30S ribosomal protein S17 ER: 30S ribosomal protein S18 ES: 30S ribosomal protein S19 ET: 30S ribosomal protein S20 Ea: protein Y FB: 23S RIBOSOMAL RNA FA: 5S RIBOSOMAL RNA FD: 50S ribosomal protein L2 FE: 50S ribosomal protein L3 FF: 50S ribosomal protein L4 FG: 50S ribosomal protein L5 FH: 50S ribosomal protein L6 FI: 50S ribosomal protein L9 FJ: 50S ribosomal protein L11 FK: 50S ribosomal protein L13 FL: 50S ribosomal protein L14 FM: 50S ribosomal protein L15 FN: 50S ribosomal protein L16 FO: 50S ribosomal protein L17 FP: 50S ribosomal protein L18 FQ: 50S ribosomal protein L19 FR: 50S ribosomal protein L20 FS: 50S ribosomal protein L21 FT: 50S ribosomal protein L22 FU: 50S ribosomal protein L23 FV: 50S ribosomal protein L24 FW: general stress protein Ctc FX: 50S ribosomal protein L27 FY: 50S ribosomal protein L29 FZ: 50S ribosomal protein L30 F1: 50S ribosomal protein L31 F2: 50S ribosomal protein L32 F3: 50S ribosomal protein L33 F4: 50S ribosomal protein L34 F5: 50S ribosomal protein L35 F6: 50S ribosomal protein L36 F7: 50S ribosomal protein L1P GA: 16S ribosomal RNA GB: 30S ribosomal protein S2 GC: 30S ribosomal protein S3 GD: 30S ribosomal protein S4 GE: 30S ribosomal protein S5 GF: 30S ribosomal protein S6 GG: 30S ribosomal protein S7 GH: 30S ribosomal protein S8 GI: 30S ribosomal protein S9 GJ: 30S ribosomal protein S10 GK: 30S ribosomal protein S11 GL: 30S ribosomal protein S12 GM: 30S ribosomal protein S13 GN: 30S ribosomal protein S14 GO: 30S ribosomal protein S15 GP: 30S ribosomal protein S16 GQ: 30S ribosomal protein S17 GR: 30S ribosomal protein S18 GS: 30S ribosomal protein S19 GT: 30S ribosomal protein S20 Ga: protein Y HB: 23S RIBOSOMAL RNA HA: 5S RIBOSOMAL RNA HD: 50S ribosomal protein L2 HE: 50S ribosomal protein L3 HF: 50S ribosomal protein L4 HG: 50S ribosomal protein L5 HH: 50S ribosomal protein L6 HI: 50S ribosomal protein L9 HJ: 50S ribosomal protein L11 HK: 50S ribosomal protein L13 HL: 50S ribosomal protein L14 HM: 50S ribosomal protein L15 HN: 50S ribosomal protein L16 HO: 50S ribosomal protein L17 HP: 50S ribosomal protein L18 HQ: 50S ribosomal protein L19 HR: 50S ribosomal protein L20 HS: 50S ribosomal protein L21 HT: 50S ribosomal protein L22 HU: 50S ribosomal protein L23 HV: 50S ribosomal protein L24 HW: general stress protein Ctc HX: 50S ribosomal protein L27 HY: 50S ribosomal protein L29 HZ: 50S ribosomal protein L30 H1: 50S ribosomal protein L31 H2: 50S ribosomal protein L32 H3: 50S ribosomal protein L33 H4: 50S ribosomal protein L34 H5: 50S ribosomal protein L35 H6: 50S ribosomal protein L36 H7: 50S ribosomal protein L1P IA: 16S ribosomal RNA IB: 30S ribosomal protein S2 IC: 30S ribosomal protein S3 ID: 30S ribosomal protein S4 IE: 30S ribosomal protein S5 IF: 30S ribosomal protein S6 IG: 30S ribosomal protein S7 IH: 30S ribosomal protein S8 II: 30S ribosomal protein S9 IJ: 30S ribosomal protein S10 IK: 30S ribosomal protein S11 IL: 30S ribosomal protein S12 IM: 30S ribosomal protein S13 IN: 30S ribosomal protein S14 IO: 30S ribosomal protein S15 IP: 30S ribosomal protein S16 IQ: 30S ribosomal protein S17 IR: 30S ribosomal protein S18 IS: 30S ribosomal protein S19 IT: 30S ribosomal protein S20 Ia: protein Y JB: 23S RIBOSOMAL RNA JA: 5S RIBOSOMAL RNA JD: 50S ribosomal protein L2 JE: 50S ribosomal protein L3 JF: 50S ribosomal protein L4 JG: 50S ribosomal protein L5 JH: 50S ribosomal protein L6 JI: 50S ribosomal protein L9 JJ: 50S ribosomal protein L11 JK: 50S ribosomal protein L13 JL: 50S ribosomal protein L14 JM: 50S ribosomal protein L15 JN: 50S ribosomal protein L16 JO: 50S ribosomal protein L17 JP: 50S ribosomal protein L18 JQ: 50S ribosomal protein L19 JR: 50S ribosomal protein L20 JS: 50S ribosomal protein L21 JT: 50S ribosomal protein L22 JU: 50S ribosomal protein L23 JV: 50S ribosomal protein L24 JW: general stress protein Ctc JX: 50S ribosomal protein L27 JY: 50S ribosomal protein L29 JZ: 50S ribosomal protein L30 J1: 50S ribosomal protein L31 J2: 50S ribosomal protein L32 J3: 50S ribosomal protein L33 J4: 50S ribosomal protein L34 J5: 50S ribosomal protein L35 J6: 50S ribosomal protein L36 J7: 50S ribosomal protein L1P
AA: 16S ribosomal RNA AB: 30S ribosomal protein S2 AC: 30S ribosomal protein S3 AD: 30S ribosomal protein S4 AE: 30S ribosomal protein S5 AF: 30S ribosomal protein S6 AG: 30S ribosomal protein S7 AH: 30S ribosomal protein S8 AI: 30S ribosomal protein S9 AJ: 30S ribosomal protein S10 AK: 30S ribosomal protein S11 AL: 30S ribosomal protein S12 AM: 30S ribosomal protein S13 AN: 30S ribosomal protein S14 AO: 30S ribosomal protein S15 AP: 30S ribosomal protein S16 AQ: 30S ribosomal protein S17 AR: 30S ribosomal protein S18 AS: 30S ribosomal protein S19 AT: 30S ribosomal protein S20 Aa: protein Y BB: 23S RIBOSOMAL RNA BA: 5S RIBOSOMAL RNA BD: 50S ribosomal protein L2 BE: 50S ribosomal protein L3 BF: 50S ribosomal protein L4 BG: 50S ribosomal protein L5 BH: 50S ribosomal protein L6 BI: 50S ribosomal protein L9 BJ: 50S ribosomal protein L11 BK: 50S ribosomal protein L13 BL: 50S ribosomal protein L14 BM: 50S ribosomal protein L15 BN: 50S ribosomal protein L16 BO: 50S ribosomal protein L17 BP: 50S ribosomal protein L18 BQ: 50S ribosomal protein L19 BR: 50S ribosomal protein L20 BS: 50S ribosomal protein L21 BT: 50S ribosomal protein L22 BU: 50S ribosomal protein L23 BV: 50S ribosomal protein L24 BW: general stress protein Ctc BX: 50S ribosomal protein L27 BY: 50S ribosomal protein L29 BZ: 50S ribosomal protein L30 B1: 50S ribosomal protein L31 B2: 50S ribosomal protein L32 B3: 50S ribosomal protein L33 B4: 50S ribosomal protein L34 B5: 50S ribosomal protein L35 B6: 50S ribosomal protein L36 B7: 50S ribosomal protein L1P
CA: 16S ribosomal RNA CB: 30S ribosomal protein S2 CC: 30S ribosomal protein S3 CD: 30S ribosomal protein S4 CE: 30S ribosomal protein S5 CF: 30S ribosomal protein S6 CG: 30S ribosomal protein S7 CH: 30S ribosomal protein S8 CI: 30S ribosomal protein S9 CJ: 30S ribosomal protein S10 CK: 30S ribosomal protein S11 CL: 30S ribosomal protein S12 CM: 30S ribosomal protein S13 CN: 30S ribosomal protein S14 CO: 30S ribosomal protein S15 CP: 30S ribosomal protein S16 CQ: 30S ribosomal protein S17 CR: 30S ribosomal protein S18 CS: 30S ribosomal protein S19 CT: 30S ribosomal protein S20 Ca: protein Y DB: 23S RIBOSOMAL RNA DA: 5S RIBOSOMAL RNA DD: 50S ribosomal protein L2 DE: 50S ribosomal protein L3 DF: 50S ribosomal protein L4 DG: 50S ribosomal protein L5 DH: 50S ribosomal protein L6 DI: 50S ribosomal protein L9 DJ: 50S ribosomal protein L11 DK: 50S ribosomal protein L13 DL: 50S ribosomal protein L14 DM: 50S ribosomal protein L15 DN: 50S ribosomal protein L16 DO: 50S ribosomal protein L17 DP: 50S ribosomal protein L18 DQ: 50S ribosomal protein L19 DR: 50S ribosomal protein L20 DS: 50S ribosomal protein L21 DT: 50S ribosomal protein L22 DU: 50S ribosomal protein L23 DV: 50S ribosomal protein L24 DW: general stress protein Ctc DX: 50S ribosomal protein L27 DY: 50S ribosomal protein L29 DZ: 50S ribosomal protein L30 D1: 50S ribosomal protein L31 D2: 50S ribosomal protein L32 D3: 50S ribosomal protein L33 D4: 50S ribosomal protein L34 D5: 50S ribosomal protein L35 D6: 50S ribosomal protein L36 D7: 50S ribosomal protein L1P
EA: 16S ribosomal RNA EB: 30S ribosomal protein S2 EC: 30S ribosomal protein S3 ED: 30S ribosomal protein S4 EE: 30S ribosomal protein S5 EF: 30S ribosomal protein S6 EG: 30S ribosomal protein S7 EH: 30S ribosomal protein S8 EI: 30S ribosomal protein S9 EJ: 30S ribosomal protein S10 EK: 30S ribosomal protein S11 EL: 30S ribosomal protein S12 EM: 30S ribosomal protein S13 EN: 30S ribosomal protein S14 EO: 30S ribosomal protein S15 EP: 30S ribosomal protein S16 EQ: 30S ribosomal protein S17 ER: 30S ribosomal protein S18 ES: 30S ribosomal protein S19 ET: 30S ribosomal protein S20 Ea: protein Y FB: 23S RIBOSOMAL RNA FA: 5S RIBOSOMAL RNA FD: 50S ribosomal protein L2 FE: 50S ribosomal protein L3 FF: 50S ribosomal protein L4 FG: 50S ribosomal protein L5 FH: 50S ribosomal protein L6 FI: 50S ribosomal protein L9 FJ: 50S ribosomal protein L11 FK: 50S ribosomal protein L13 FL: 50S ribosomal protein L14 FM: 50S ribosomal protein L15 FN: 50S ribosomal protein L16 FO: 50S ribosomal protein L17 FP: 50S ribosomal protein L18 FQ: 50S ribosomal protein L19 FR: 50S ribosomal protein L20 FS: 50S ribosomal protein L21 FT: 50S ribosomal protein L22 FU: 50S ribosomal protein L23 FV: 50S ribosomal protein L24 FW: general stress protein Ctc FX: 50S ribosomal protein L27 FY: 50S ribosomal protein L29 FZ: 50S ribosomal protein L30 F1: 50S ribosomal protein L31 F2: 50S ribosomal protein L32 F3: 50S ribosomal protein L33 F4: 50S ribosomal protein L34 F5: 50S ribosomal protein L35 F6: 50S ribosomal protein L36 F7: 50S ribosomal protein L1P
GA: 16S ribosomal RNA GB: 30S ribosomal protein S2 GC: 30S ribosomal protein S3 GD: 30S ribosomal protein S4 GE: 30S ribosomal protein S5 GF: 30S ribosomal protein S6 GG: 30S ribosomal protein S7 GH: 30S ribosomal protein S8 GI: 30S ribosomal protein S9 GJ: 30S ribosomal protein S10 GK: 30S ribosomal protein S11 GL: 30S ribosomal protein S12 GM: 30S ribosomal protein S13 GN: 30S ribosomal protein S14 GO: 30S ribosomal protein S15 GP: 30S ribosomal protein S16 GQ: 30S ribosomal protein S17 GR: 30S ribosomal protein S18 GS: 30S ribosomal protein S19 GT: 30S ribosomal protein S20 Ga: protein Y HB: 23S RIBOSOMAL RNA HA: 5S RIBOSOMAL RNA HD: 50S ribosomal protein L2 HE: 50S ribosomal protein L3 HF: 50S ribosomal protein L4 HG: 50S ribosomal protein L5 HH: 50S ribosomal protein L6 HI: 50S ribosomal protein L9 HJ: 50S ribosomal protein L11 HK: 50S ribosomal protein L13 HL: 50S ribosomal protein L14 HM: 50S ribosomal protein L15 HN: 50S ribosomal protein L16 HO: 50S ribosomal protein L17 HP: 50S ribosomal protein L18 HQ: 50S ribosomal protein L19 HR: 50S ribosomal protein L20 HS: 50S ribosomal protein L21 HT: 50S ribosomal protein L22 HU: 50S ribosomal protein L23 HV: 50S ribosomal protein L24 HW: general stress protein Ctc HX: 50S ribosomal protein L27 HY: 50S ribosomal protein L29 HZ: 50S ribosomal protein L30 H1: 50S ribosomal protein L31 H2: 50S ribosomal protein L32 H3: 50S ribosomal protein L33 H4: 50S ribosomal protein L34 H5: 50S ribosomal protein L35 H6: 50S ribosomal protein L36 H7: 50S ribosomal protein L1P
IA: 16S ribosomal RNA IB: 30S ribosomal protein S2 IC: 30S ribosomal protein S3 ID: 30S ribosomal protein S4 IE: 30S ribosomal protein S5 IF: 30S ribosomal protein S6 IG: 30S ribosomal protein S7 IH: 30S ribosomal protein S8 II: 30S ribosomal protein S9 IJ: 30S ribosomal protein S10 IK: 30S ribosomal protein S11 IL: 30S ribosomal protein S12 IM: 30S ribosomal protein S13 IN: 30S ribosomal protein S14 IO: 30S ribosomal protein S15 IP: 30S ribosomal protein S16 IQ: 30S ribosomal protein S17 IR: 30S ribosomal protein S18 IS: 30S ribosomal protein S19 IT: 30S ribosomal protein S20 Ia: protein Y JB: 23S RIBOSOMAL RNA JA: 5S RIBOSOMAL RNA JD: 50S ribosomal protein L2 JE: 50S ribosomal protein L3 JF: 50S ribosomal protein L4 JG: 50S ribosomal protein L5 JH: 50S ribosomal protein L6 JI: 50S ribosomal protein L9 JJ: 50S ribosomal protein L11 JK: 50S ribosomal protein L13 JL: 50S ribosomal protein L14 JM: 50S ribosomal protein L15 JN: 50S ribosomal protein L16 JO: 50S ribosomal protein L17 JP: 50S ribosomal protein L18 JQ: 50S ribosomal protein L19 JR: 50S ribosomal protein L20 JS: 50S ribosomal protein L21 JT: 50S ribosomal protein L22 JU: 50S ribosomal protein L23 JV: 50S ribosomal protein L24 JW: general stress protein Ctc JX: 50S ribosomal protein L27 JY: 50S ribosomal protein L29 JZ: 50S ribosomal protein L30 J1: 50S ribosomal protein L31 J2: 50S ribosomal protein L32 J3: 50S ribosomal protein L33 J4: 50S ribosomal protein L34 J5: 50S ribosomal protein L35 J6: 50S ribosomal protein L36 J7: 50S ribosomal protein L1P
Resolution: 11.5→500 Å / Isotropic thermal model: ANISOTROPIC / Cross valid method: THROUGHOUT / σ(F): 0 Details: 235 RIGID BODIES REFINEMENT, GROUPED THIS ENTRY. COORDINATES USED FOR SOLVING AND REFINING THIS SUBUNIT COMES FROM PDB ENTRY, 1PNS, WHERE THE SEQUENCE REPRESENTS THAT OF T. THERMOPHILUS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.401
6283
-
RANDOM
Rwork
0.395
-
-
-
obs
0.395
62383
93.9 %
-
Refinement step
Cycle: LAST / Resolution: 11.5→500 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
19749
32799
0
0
52548
+
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