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- PDB-4rnp: BACTERIOPHAGE T7 RNA POLYMERASE, HIGH SALT CRYSTAL FORM, LOW TEMP... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4rnp | |||||||||
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Title | BACTERIOPHAGE T7 RNA POLYMERASE, HIGH SALT CRYSTAL FORM, LOW TEMPERATURE DATA, ALPHA-CARBONS ONLY | |||||||||
![]() | RNA POLYMERASE | |||||||||
![]() | NUCLEOTIDYLTRANSFERASE / RNA POLYMERASE / TRANSCRIPTION | |||||||||
Function / homology | ![]() DNA-templated viral transcription / mitochondrial promoter sequence-specific DNA binding / DNA-directed RNA polymerase complex / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / DNA-templated transcription Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Liu, Z.J. / Sousa, R. / Rose, J.P. / Wang, B.C. | |||||||||
![]() | ![]() Title: Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution. Authors: Sousa, R. / Chung, Y.J. / Rose, J.P. / Wang, B.C. #1: ![]() Title: Preparation of Crystals of T7 RNA Polymerase Suitable for High-Resolution X-Ray Structure Analysis Authors: Sousa, R. / Lafer, E.M. / Wang, B.C. #2: ![]() Title: The Use of Glycerol in the Crystallization of T7 RNA Polymerase: Implications for the Use of Co-Solvents in Protein Crystallization Authors: Sousa, R. / Lafer, E.M. #3: ![]() Title: Single Crystals of Bacteriophage T7 RNA Polymerase Authors: Sousa, R. / Rose, J.P. / Chung, Y.J. / Lafer, E.M. / Wang, B.C. #4: ![]() Title: Nucleotide Sequence of the Gene for Bacteriophage T7 RNA Polymerase Authors: Moffatt, B.A. / Dunn, J.J. / Studier, F.W. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 86.9 KB | Display | ![]() |
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PDB format | ![]() | 49.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 330.7 KB | Display | ![]() |
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Full document | ![]() | 330.7 KB | Display | |
Data in XML | ![]() | 721 B | Display | |
Data in CIF | ![]() | 21.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Details | THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS THREE MOLECULES DENOTED AS CHAINS 'A', 'B', AND 'C' IN THIS ENTRY. THE THREE CHAIN ARE RELATED BY LOCAL 3(1) SYMMETRY. |
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Components
#1: Protein | Mass: 98984.227 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Details: HIGH SALT FORM, LOW TEMPERATURE DATA / Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.38 Å3/Da / Density % sol: 64 % |
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Crystal grow | *PLUS |
-Data collection
Diffraction | Mean temperature: 81 K |
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Diffraction source | Source: ![]() |
Detector | Type: MAR scanner 300 mm plate / Detector: IMAGE PLATE / Date: Jun 10, 1996 / Details: YALE/MSC MIRRORS |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→50 Å / Num. obs: 88576 / % possible obs: 77.52 % / Observed criterion σ(I): 2 / Redundancy: 4.11 % / Rsym value: 0.138 |
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Processing
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Refinement | Method to determine structure: ![]() Details: UNREFINED ALPHA CARBON MODEL THE COORDINATES PRESENTED IN THIS ENTRY ARE UNREFINED ALPHA CARBON COORDINATES OBTAINED FROM HIGHER RESOLUTION LOW TEMPERATURE DATA. THE REFINEMENT IS IN ...Details: UNREFINED ALPHA CARBON MODEL THE COORDINATES PRESENTED IN THIS ENTRY ARE UNREFINED ALPHA CARBON COORDINATES OBTAINED FROM HIGHER RESOLUTION LOW TEMPERATURE DATA. THE REFINEMENT IS IN PROGRESS. THE FULL COORDINATE SET WILL BE DEPOSITED ONCE THE REFINEMENT IS COMPLETE. THERE ARE 10 REGIONS OF UNDEFINED DENSITY IN EACH CHAIN. THESE REGIONS ARE ALL LOCATED ON THE MOLECULAR SURFACE. REGION 1 RESIDUES 1 - 6 REGION 2 RESIDUES 57 - 70 REGION 3 RESIDUES 164 - 179 REGION 4 RESIDUES 232 - 240 REGION 5 RESIDUES 346 - 348 REGION 6 RESIDUES 495 - 499 REGION 7 RESIDUES 587 - 610 REGION 8 RESIDUES 636 - 645 REGION 9 RESIDUES 709 - 720 REGION 10 RESIDUES 751 - 754 IN TOTAL, THERE ARE 780 (88.4%) RESIDUES ASSIGNED IN ELECTRON DENSITY MAP AND 103 (11.6%) RESIDUES ARE MISSING. | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3 Å
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