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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 4mjs | ||||||
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タイトル | crystal structure of a PB1 complex | ||||||
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![]() | TRANSFERASE/PROTEIN BINDING / PB1 domain / PB1 heterodimer and protein interaction / TRANSFERASE-PROTEIN BINDING complex | ||||||
機能・相同性 | ![]() TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) / VEGFR2 mediated cell proliferation / calcium,diacylglycerol-dependent serine/threonine kinase activity / activation of phospholipase D activity / protein localization => GO:0008104 / brown fat cell proliferation / protein localization to perinuclear region of cytoplasm / protein kinase C signaling / negative regulation of peptidyl-tyrosine phosphorylation / regulation of Ras protein signal transduction ...TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) / VEGFR2 mediated cell proliferation / calcium,diacylglycerol-dependent serine/threonine kinase activity / activation of phospholipase D activity / protein localization => GO:0008104 / brown fat cell proliferation / protein localization to perinuclear region of cytoplasm / protein kinase C signaling / negative regulation of peptidyl-tyrosine phosphorylation / regulation of Ras protein signal transduction / protein targeting to vacuole involved in autophagy / Estrogen-stimulated signaling through PRKCZ / Lewy body / RHO GTPases Activate NADPH Oxidases / protein kinase C / response to mitochondrial depolarisation / aggrephagy / amphisome / positive regulation of T-helper 2 cell differentiation / negative regulation of toll-like receptor 4 signaling pathway / diacylglycerol-dependent serine/threonine kinase activity / myelin sheath abaxonal region / positive regulation of T-helper 2 cell cytokine production / positive regulation of protein transport / vesicle transport along microtubule / pexophagy / apical cortex / regulation of protein complex stability / autophagy of mitochondrion / endosome organization / positive regulation of interleukin-13 production / positive regulation of interleukin-5 production / non-membrane-bounded organelle assembly / molecular sequestering activity / axon hillock / membrane hyperpolarization / negative regulation of hydrolase activity / phagophore assembly site / regulation of mitochondrion organization / aggresome / regulation of canonical NF-kappaB signal transduction / ubiquitin-modified protein reader activity / Nuclear events mediated by NFE2L2 / autolysosome / positive regulation of cell-matrix adhesion / microtubule organizing center / K63-linked polyubiquitin modification-dependent protein binding / intracellular non-membrane-bounded organelle / neuron projection extension / endosomal transport / temperature homeostasis / establishment of cell polarity / immune system process / positive regulation of interleukin-4 production / cell leading edge / membrane depolarization / positive regulation of excitatory postsynaptic potential / phospholipase binding / positive regulation of interleukin-10 production / mitophagy / potassium channel regulator activity / bicellular tight junction / autophagosome / positive regulation of synaptic transmission / negative regulation of protein-containing complex assembly / long-term memory / positive regulation of autophagy / energy homeostasis / signaling adaptor activity / positive regulation of insulin receptor signaling pathway / stress fiber / inclusion body / sperm midpiece / negative regulation of protein ubiquitination / 14-3-3 protein binding / protein sequestering activity / p75NTR recruits signalling complexes / PINK1-PRKN Mediated Mitophagy / Pexophagy / negative regulation of insulin receptor signaling pathway / activation of protein kinase B activity / NF-kB is activated and signals survival / NRIF signals cell death from the nucleus / sarcomere / SH2 domain binding / molecular condensate scaffold activity / ubiquitin binding / positive regulation of long-term synaptic potentiation / protein localization to plasma membrane / response to ischemia / long-term synaptic potentiation / macroautophagy / protein kinase C binding / positive regulation of protein localization to plasma membrane / ionotropic glutamate receptor binding / P-body / protein catabolic process / protein localization / receptor tyrosine kinase binding / PML body 類似検索 - 分子機能 | ||||||
生物種 | ![]() ![]() ![]() | ||||||
手法 | ![]() ![]() ![]() | ||||||
![]() | Ren, J. / Wang, Z.X. / Wu, J.W. | ||||||
![]() | ![]() タイトル: Structural and biochemical insights into the homotypic PB1-PB1 complex between PKC zeta and p62 著者: Ren, J. / Wang, J. / Wang, Z.X. / Wu, J.W. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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PDBx/mmCIF形式 | ![]() | 414.5 KB | 表示 | ![]() |
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PDB形式 | ![]() | 341.5 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
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-検証レポート
文書・要旨 | ![]() | 634.5 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 676.2 KB | 表示 | |
XML形式データ | ![]() | 74.8 KB | 表示 | |
CIF形式データ | ![]() | 102.9 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
関連構造データ | ![]() 1wmhS S: 精密化の開始モデル |
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類似構造データ |
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リンク
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集合体
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単位格子 |
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要素
#1: タンパク質 | 分子量: 10287.679 Da / 分子数: 12 / 断片: PB1 domain, UNP residues 15-101 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() ![]() #2: タンパク質 | 分子量: 11542.182 Da / 分子数: 12 / 断片: PB1 domain, UNP residues 3-102 / Mutation: D69A,D71R / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() #3: 化合物 | ChemComp-EDO / #4: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 2.88 Å3/Da / 溶媒含有率: 57.3 % |
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結晶化 | 温度: 294 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 8.5 詳細: 0.1M Tris-HCl, 8% PEG8000, 0.4M MgCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K |
-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: ![]() ![]() ![]() |
検出器 | タイプ: ADSC QUANTUM 315r / 検出器: CCD / 日付: 2011年12月22日 |
放射 | モノクロメーター: double crystal / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.97892 Å / 相対比: 1 |
反射 | 解像度: 2.5→40 Å / Num. all: 105540 / Num. obs: 105401 / % possible obs: 100 % / Observed criterion σ(F): 5 / Observed criterion σ(I): 5 / 冗長度: 7.3 % / Rmerge(I) obs: 0.086 / Net I/σ(I): 22.6 |
反射 シェル | 解像度: 2.5→2.59 Å / 冗長度: 7.5 % / Rmerge(I) obs: 0.519 / Mean I/σ(I) obs: 4.1 / % possible all: 100 |
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解析
ソフトウェア |
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精密化 | 構造決定の手法: ![]() 開始モデル: PDB ENTRY 1WMH 解像度: 2.5→39.534 Å / SU ML: 0.37 / σ(F): 1.34 / 位相誤差: 29.45 / 立体化学のターゲット値: ML
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溶媒の処理 | 減衰半径: 0.98 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 30.28 Å2 / ksol: 0.31 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ |
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精密化ステップ | サイクル: LAST / 解像度: 2.5→39.534 Å
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拘束条件 |
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LS精密化 シェル |
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