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Open data
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Basic information
Entry | Database: PDB / ID: 4l4d | ||||||
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Title | Structure of cyanide and camphor bound P450cam mutant L358A | ||||||
![]() | Camphor 5-monooxygenase | ||||||
![]() | OXIDOREDUCTASE / mono-oxygenase / cytochrome P450 | ||||||
Function / homology | ![]() camphor 5-monooxygenase / camphor 5-monooxygenase activity / (+)-camphor catabolic process / cholest-4-en-3-one 26-monooxygenase activity / steroid hydroxylase activity / cholesterol catabolic process / iron ion binding / heme binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Batabyal, D. / Li, H. / Poulos, T.L. | ||||||
![]() | ![]() Title: Synergistic Effects of Mutations in Cytochrome P450cam Designed To Mimic CYP101D1. Authors: Batabyal, D. / Li, H. / Poulos, T.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 184.3 KB | Display | ![]() |
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PDB format | ![]() | 143.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 814.9 KB | Display | ![]() |
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Full document | ![]() | 819.6 KB | Display | |
Data in XML | ![]() | 21 KB | Display | |
Data in CIF | ![]() | 31.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4l49C ![]() 4l4aC ![]() 4l4bC ![]() 4l4cC ![]() 4l4eC ![]() 4l4fC ![]() 4l4gC ![]() 2cppS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 46645.934 Da / Num. of mol.: 1 / Mutation: C334A, L358A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Non-polymers , 5 types, 406 molecules ![](data/chem/img/HEM.gif)
![](data/chem/img/CYN.gif)
![](data/chem/img/CAM.gif)
![](data/chem/img/K.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/CYN.gif)
![](data/chem/img/CAM.gif)
![](data/chem/img/K.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-HEM / | ||
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#3: Chemical | ChemComp-CYN / | ||
#4: Chemical | ChemComp-CAM / | ||
#5: Chemical | #6: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.77 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7.4 Details: 50 mM Tris, 400 mM potassium chloride, 32% PEG4000, 1.2 mM D-camphor, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN 944+ / Detector: CCD / Date: Feb 15, 2012 |
Radiation | Monochromator: Varimax Optic / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Resolution: 2.104→50 Å / Num. obs: 22593 / % possible obs: 95 % / Observed criterion σ(I): -3 / Redundancy: 3.7 % / Rmerge(I) obs: 0.038 / Net I/σ(I): 30 |
Reflection shell | Resolution: 2.104→2.17 Å / Redundancy: 2.5 % / Rmerge(I) obs: 0.07 / Mean I/σ(I) obs: 12 / % possible all: 85 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2CPP Resolution: 2.104→34.521 Å / SU ML: 0.23 / σ(F): 1.35 / Phase error: 22.89 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.8 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.104→34.521 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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