negative regulation of primary amine oxidase activity / positive regulation of retrograde transport, endosome to Golgi / regulation of lipid transport / positive regulation of neurotransmitter uptake / negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway / regulation protein catabolic process at presynapse / regulation of protein targeting to mitochondrion / negative regulation of spontaneous neurotransmitter secretion / negative regulation of intralumenal vesicle formation / negative regulation of glucokinase activity ...negative regulation of primary amine oxidase activity / positive regulation of retrograde transport, endosome to Golgi / regulation of lipid transport / positive regulation of neurotransmitter uptake / negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway / regulation protein catabolic process at presynapse / regulation of protein targeting to mitochondrion / negative regulation of spontaneous neurotransmitter secretion / negative regulation of intralumenal vesicle formation / negative regulation of glucokinase activity / negative regulation of exosomal secretion / mitochondrion to lysosome vesicle-mediated transport / type 2 mitophagy / Lewy body / protein K27-linked ubiquitination / Parkin-FBXW7-Cul1 ubiquitin ligase complex / negative regulation of actin filament bundle assembly / positive regulation of mitochondrial fusion / free ubiquitin chain polymerization / regulation of synaptic vesicle transport / negative regulation of mitochondrial fusion / protein K29-linked ubiquitination / : / positive regulation of protein linear polyubiquitination / F-box domain binding / RBR-type E3 ubiquitin transferase / negative regulation by host of viral genome replication / regulation of necroptotic process / positive regulation of mitophagy / regulation of cellular response to oxidative stress / regulation of dopamine metabolic process / dopaminergic synapse / negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator / cellular response to toxic substance / positive regulation of dendrite extension / protein K6-linked ubiquitination / positive regulation of tumor necrosis factor-mediated signaling pathway / positive regulation of proteasomal protein catabolic process / norepinephrine metabolic process / protein localization to mitochondrion / negative regulation of JNK cascade / positive regulation of protein localization to membrane / negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / cellular response to dopamine / mitochondrial fission / protein K11-linked ubiquitination / aggresome assembly / ubiquitin conjugating enzyme binding / regulation of mitochondrion organization / regulation of canonical Wnt signaling pathway / autophagy of mitochondrion / aggresome / regulation of reactive oxygen species metabolic process / regulation of synaptic vesicle endocytosis / positive regulation of DNA binding / positive regulation of mitochondrial fission / dopamine uptake involved in synaptic transmission / regulation of dopamine secretion / negative regulation of release of cytochrome c from mitochondria / ubiquitin-specific protease binding / dopamine metabolic process / protein deubiquitination / startle response / protein monoubiquitination / cullin family protein binding / phospholipase binding / protein K63-linked ubiquitination / regulation of protein ubiquitination / regulation of glucose metabolic process / mitophagy / cellular response to unfolded protein / negative regulation of reactive oxygen species metabolic process / cellular response to manganese ion / protein autoubiquitination / negative regulation of insulin secretion / proteasomal protein catabolic process / protein K48-linked ubiquitination / negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway / ubiquitin ligase complex / ERAD pathway / heat shock protein binding / response to endoplasmic reticulum stress / Hsp70 protein binding / tubulin binding / negative regulation of protein phosphorylation / adult locomotory behavior / regulation of mitochondrial membrane potential / Josephin domain DUBs / PINK1-PRKN Mediated Mitophagy / learning / ubiquitin binding / mitochondrion organization / regulation of autophagy / central nervous system development / synaptic transmission, glutamatergic / G protein-coupled receptor binding / PDZ domain binding / macroautophagy / protein destabilization / regulation of protein stability 類似検索 - 分子機能
IBR domain / : / : / : / E3 ubiquitin-protein ligase parkin / RING/Ubox-like zinc-binding domain / Parkin, RING/Ubox like zinc-binding domain / RING/Ubox like zinc-binding domain / RING/Ubox like zinc-binding domain / E3 ubiquitin ligase RBR family ...IBR domain / : / : / : / E3 ubiquitin-protein ligase parkin / RING/Ubox-like zinc-binding domain / Parkin, RING/Ubox like zinc-binding domain / RING/Ubox like zinc-binding domain / RING/Ubox like zinc-binding domain / E3 ubiquitin ligase RBR family / IBR domain / In Between Ring fingers / TRIAD supradomain / TRIAD supradomain profile. / Ubiquitin family / Ubiquitin homologues / Ubiquitin domain profile. / Ubiquitin-like domain / Ubiquitin-like domain superfamily 類似検索 - ドメイン・相同性
解像度: 1.58→73 Å / Num. all: 52798 / Num. obs: 52033 / % possible obs: 98.55 % / 冗長度: 6.9 % / Rsym value: 0.078 / Net I/σ(I): 11
反射 シェル
解像度: 1.58→1.67 Å / 冗長度: 6.9 % / Rmerge(I) obs: 0.99 / Mean I/σ(I) obs: 1.6 / Rsym value: 0.99 / % possible all: 99.8
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解析
ソフトウェア
名称
バージョン
分類
SHELX
モデル構築
REFMAC
5.6.0117
精密化
MOSFLM
データ削減
SCALA
データスケーリング
SHELX
位相決定
精密化
構造決定の手法: 多波長異常分散 / 解像度: 1.58→72.81 Å / Cor.coef. Fo:Fc: 0.956 / Cor.coef. Fo:Fc free: 0.937 / SU B: 1.607 / SU ML: 0.058 / 交差検証法: THROUGHOUT / ESU R: 0.087 / ESU R Free: 0.092 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.24528
2650
5.1 %
RANDOM
Rwork
0.20508
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-
-
obs
0.20706
52033
99.46 %
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all
-
52033
-
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK