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- PDB-4hs1: High-resolution crystal structure of Glutaredoxin like protein Nr... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4hs1 | ||||||
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Title | High-resolution crystal structure of Glutaredoxin like protein NrdH from Mycobacterium tuberculosis. | ||||||
![]() | Glutaredoxin NrdH, putative | ||||||
![]() | ELECTRON TRANSPORT / Thioredoxin / Glutaredoxin like / Thioredoxin Reductase / Cytosol | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Phulera, S. / Mande, S.C. | ||||||
![]() | ![]() Title: The Crystal Structure of Mycobacterium tuberculosis NrdH at 0.87 A Suggests a Possible Mode of Its Activity. Authors: Phulera, S. / Mande, S.C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 77.8 KB | Display | ![]() |
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PDB format | ![]() | 59.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 455.6 KB | Display | ![]() |
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Full document | ![]() | 456.9 KB | Display | |
Data in XML | ![]() | 8 KB | Display | |
Data in CIF | ![]() | 10.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4f2iSC ![]() 4k8mC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 9256.525 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Non-polymers , 5 types, 103 molecules ![](data/chem/img/NO3.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | #3: Chemical | ChemComp-CL / | #4: Chemical | ChemComp-GOL / | #5: Chemical | ChemComp-PEG / | #6: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.73 Å3/Da / Density % sol: 28.97 % |
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Crystal grow | Temperature: 277.15 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 0.2M Ammonium Nitrate, 20% PEG 3350, 10mM Tris, 50mM NaCl, 1% Glycerol, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||||||||
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Jul 27, 2012 | ||||||||||||||||||
Radiation | Monochromator: Band pass 1.9x10-4 for a Si(111) monochromator Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||||||||
Radiation wavelength | Wavelength: 0.71255 Å / Relative weight: 1 | ||||||||||||||||||
Reflection | Resolution: 0.87→23.853 Å / Num. obs: 53538 / % possible obs: 99.8 % / Redundancy: 9.2 % / Biso Wilson estimate: 5.9 Å2 / Rmerge(I) obs: 0.064 / Net I/σ(I): 16.4 | ||||||||||||||||||
Reflection shell |
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Processing
Software |
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 4F2I Resolution: 0.87→23.853 Å / SU ML: 0.09 / σ(F): 1.35 / Phase error: 15.08 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 1.4 Å / VDW probe radii: 1.2 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.87→23.853 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 14
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