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Open data
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Basic information
Entry | Database: PDB / ID: 4g4l | ||||||
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Title | Crystal structure of the de novo designed peptide alpha4tbA6 | ||||||
![]() | alpha4tbA6 | ||||||
![]() | DE NOVO PROTEIN / alpha helix / de novo designed / coiled-coil / nonnatural amino acid | ||||||
Function / homology | ACETYL GROUP / DI(HYDROXYETHYL)ETHER![]() | ||||||
Method | ![]() ![]() ![]() ![]() | ||||||
![]() | Buer, B.C. / Meagher, J.L. / Stuckey, J.A. / Marsh, E.N.G. | ||||||
![]() | ![]() Title: Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. Authors: Buer, B.C. / Meagher, J.L. / Stuckey, J.A. / Marsh, E.N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 32.1 KB | Display | ![]() |
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PDB format | ![]() | 25.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 653.2 KB | Display | ![]() |
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Full document | ![]() | 653.6 KB | Display | |
Data in XML | ![]() | 4.9 KB | Display | |
Data in CIF | ![]() | 5.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 3350.914 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | ChemComp-P6G / | #3: Chemical | ChemComp-ACE / | #4: Chemical | ChemComp-PEG / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.78 Å3/Da / Density % sol: 30.94 % |
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Crystal grow | Temperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 9 Details: 48% PEG400, 0.1M HEPES pH 9.0, vapor diffusion, hanging drop, temperature 293.15K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Nov 30, 2011 |
Radiation | Monochromator: Diamond [111] / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97872 Å / Relative weight: 1 |
Reflection | Resolution: 1.48→50 Å / Num. obs: 7348 |
-Phasing
Phasing | Method: ![]() |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso max: 120.56 Å2 / Biso mean: 37.9767 Å2 / Biso min: 18.39 Å2
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Refine analyze | Luzzati coordinate error obs: 0.241 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.54→27.56 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.54→1.72 Å / Total num. of bins used: 5
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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