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- PDB-4fh0: Crystal Structure of Human BinCARD CARD, double mutant F16M/L66M ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4fh0 | ||||||
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Title | Crystal Structure of Human BinCARD CARD, double mutant F16M/L66M SeMet form | ||||||
![]() | Bcl10-interacting CARD protein | ||||||
![]() | IMMUNE SYSTEM / Apoptosis / Mainly alpha / Bcl10 / Nucleus / ER / Mitochondria | ||||||
Function / homology | ![]() CARD domain binding / negative regulation of canonical NF-kappaB signal transduction / mitochondrial membrane / endoplasmic reticulum membrane / mitochondrion / nucleus / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chen, K.-E. / Kobe, B. / Martin, J.L. | ||||||
![]() | ![]() Title: The structure of the caspase recruitment domain of BinCARD reveals that all three cysteines can be oxidized. Authors: Chen, K.E. / Richards, A.A. / Caradoc-Davies, T.T. / Vajjhala, P.R. / Robin, G. / Lua, L.H. / Hill, J.M. / Schroder, K. / Sweet, M.J. / Kellie, S. / Kobe, B. / Martin, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 132.6 KB | Display | ![]() |
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PDB format | ![]() | 113.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 438.8 KB | Display | ![]() |
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Full document | ![]() | 439.5 KB | Display | |
Data in XML | ![]() | 11.7 KB | Display | |
Data in CIF | ![]() | 16.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Details | The biological unit is a monomer. There is 2 biological unit in the asymmetric unit |
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Components
#1: Protein | Mass: 12135.491 Da / Num. of mol.: 2 / Fragment: caspase recruitment domain / Mutation: F16M, L66M Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.94 Å3/Da / Density % sol: 36.21 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion / pH: 6.5 Details: Bis-Tris pH 6.5, ammonium sulfate, PEG 3350, VAPOR DIFFUSION, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Jul 9, 2009 | ||||||||||||
Radiation | Monochromator: Sagitally focused Si / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.25→32.139 Å / Num. all: 45786 / Num. obs: 45785 / % possible obs: 99.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 7.1 % / Biso Wilson estimate: 12 Å2 / Limit h max: 25 / Limit h min: -25 / Limit k max: 27 / Limit k min: -29 / Limit l max: 34 / Limit l min: 0 / Rmerge(I) obs: 0.08 / Net I/σ(I): 16.2 | ||||||||||||
Reflection scale | Group code: 1 | ||||||||||||
Reflection shell | Resolution: 1.4→1.47 Å / Redundancy: 7 % / Rmerge(I) obs: 0.58 / Mean I/σ(I) obs: 4.4 / Num. unique all: 6572 / % possible all: 92.4 |
-Phasing
Phasing | Method: ![]() |
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Processing
Software |
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.86 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 60.123 Å2 / ksol: 0.4 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 49.37 Å2 / Biso mean: 17.6784 Å2 / Biso min: 6.2 Å2
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Refine analyze | Luzzati coordinate error obs: 0.27 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.4→27.724 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 12
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