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Yorodumi- PDB-1giw: SOLUTION STRUCTURE OF REDUCED HORSE HEART CYTOCHROME C, NMR, MINI... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1giw | ||||||
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Title | SOLUTION STRUCTURE OF REDUCED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||
Components | CYTOCHROME C | ||||||
Keywords | ELECTRON TRANSPORT / CYTOCHROME C | ||||||
Function / homology | Function and homology information cytochrome c-heme linkage / cytochrome complex / positive regulation of cysteine-type endopeptidase activity / mitochondrial electron transport, cytochrome c to oxygen / mitochondrial electron transport, ubiquinol to cytochrome c / positive regulation of cysteine-type endopeptidase activity involved in apoptotic process / respirasome / mitochondrial intermembrane space / electron transfer activity / positive regulation of apoptotic process ...cytochrome c-heme linkage / cytochrome complex / positive regulation of cysteine-type endopeptidase activity / mitochondrial electron transport, cytochrome c to oxygen / mitochondrial electron transport, ubiquinol to cytochrome c / positive regulation of cysteine-type endopeptidase activity involved in apoptotic process / respirasome / mitochondrial intermembrane space / electron transfer activity / positive regulation of apoptotic process / lipid binding / apoptotic process / heme binding / identical protein binding / metal ion binding / cytosol Similarity search - Function | ||||||
Biological species | Equus caballus (horse) | ||||||
Method | SOLUTION NMR / SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION | ||||||
Authors | Banci, L. / Bertini, I. / Huber, J.G. / Spyroulias, G.A. / Turano, P. | ||||||
Citation | Journal: J.Biol.Inorg.Chem. / Year: 1999 Title: Solution structure of reduced horse heart cytochrome c. Authors: Banci, L. / Bertini, I. / Huber, J.G. / Spyroulias, G.A. / Turano, P. #1: Journal: Biochemistry / Year: 1994 Title: Solution Structure of Horse Heart Ferrocytochrome C Determined by High-Resolution NMR and Restrained Simulated Annealing Authors: Qi, P.X. / Di Stefano, D.L. / Wand, A.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1giw.cif.gz | 42.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1giw.ent.gz | 33.5 KB | Display | PDB format |
PDBx/mmJSON format | 1giw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gi/1giw ftp://data.pdbj.org/pub/pdb/validation_reports/gi/1giw | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11725.598 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: REDUCED FORM / Source: (natural) Equus caballus (horse) / Organ: HEART / References: UniProt: P00004 |
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#2: Chemical | ChemComp-HEC / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: NOESY TOCSY |
-Sample preparation
Details | Contents: H2O |
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Sample conditions | Ionic strength: 100 mM PHOSPHATE / pH: 7.0 / Pressure: 1013 mbar / Temperature: 293 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE 800 / Manufacturer: Bruker / Model: AVANCE 800 / Field strength: 800 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: SIMULATED ANNEALING, TORSION ANGLE DYNAMICS, RESTRAINED ENERGY MINIMIZATION Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE | ||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 40 / Conformers submitted total number: 1 |