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- PDB-4cg3: Structural and functional studies on a thermostable polyethylene ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4cg3 | ||||||
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Title | Structural and functional studies on a thermostable polyethylene therephtalate degrading hydrolase from Thermobifida fusca | ||||||
![]() | CUTINASE | ||||||
![]() | HYDROLASE / PET DEGRADATION / ALPHA-BETA- FOLD | ||||||
Function / homology | ![]() poly(ethylene terephthalate) hydrolase / cutinase activity / cutinase / periplasmic space / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Roth, C. / Wei, R. / Oeser, T. / Then, J. / Foellner, C. / Zimmermann, W. / Straeter, N. | ||||||
![]() | ![]() Title: Structural and Functional Studies on a Thermostable Polyethylene Terephthalate Degrading Hydrolase from Thermobifida Fusca. Authors: Roth, C. / Wei, R. / Oeser, T. / Then, J. / Follner, C. / Zimmermann, W. / Strater, N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 13.7 MB | Display | ![]() |
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PDB format | ![]() | 11.7 MB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.4 MB | Display | |
Data in XML | ![]() | 708.8 KB | Display | |
Data in CIF | ![]() | 892.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4cg1C ![]() 4cg2C ![]() 1jfrS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Number of models | 77 |
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Components
#1: Protein | Mass: 33789.965 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 45.2 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.541 Å / Relative weight: 1 |
Reflection | Resolution: 1.55→23 Å / Num. obs: 36710 / % possible obs: 100 % / Observed criterion σ(I): 2.55 / Redundancy: 3.8 % / Biso Wilson estimate: 16 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 7.6 |
Reflection shell | Resolution: 1.55→1.58 Å / Redundancy: 3.7 % / Rmerge(I) obs: 0.59 / Mean I/σ(I) obs: 2.4 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1JFR Resolution: 1.55→23.122 Å / SU ML: 0.11 / σ(F): 1.24 / Phase error: 13.59 / Stereochemistry target values: ML / Details: REFINED USING PHENIX.ENSEMBLE REFINEMENT
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Solvent computation | Shrinkage radii: 0.8 Å / VDW probe radii: 1 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 17.1 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.55→23.122 Å
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LS refinement shell |
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