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- PDB-4c9j: Structure of yeast mitochondrial ADP/ATP carrier isoform 3 inhibi... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4c9j | ||||||
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Title | Structure of yeast mitochondrial ADP/ATP carrier isoform 3 inhibited by carboxyatractyloside (P212121 crystal form) | ||||||
![]() | ADP, ATP CARRIER PROTEIN 3 | ||||||
![]() | TRANSPORT PROTEIN / MITOCHONDRIAL CARRIER | ||||||
Function / homology | ![]() ATP:ADP antiporter activity / mitochondrial ADP transmembrane transport / Mitochondrial protein import / mitochondrial ATP transmembrane transport / heme transport / anaerobic respiration / transmembrane transport / mitochondrial inner membrane / mitochondrion / identical protein binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ruprecht, J.J. / Hellawell, A.M. / Harding, M. / Crichton, P.G. / McCoy, A.J. / Kunji, E.R.S. | ||||||
![]() | ![]() Title: Structures of Yeast Mitochondrial Adp/ATP Carriers Support a Domain-Based Alternating-Access Transport Mechanism Authors: Ruprecht, J.J. / Hellawell, A.M. / Harding, M. / Crichton, P.G. / Mccoy, A.J. / Kunji, E.R.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 128.8 KB | Display | ![]() |
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PDB format | ![]() | 97.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2.1 MB | Display | ![]() |
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Full document | ![]() | 2.1 MB | Display | |
Data in XML | ![]() | 24.1 KB | Display | |
Data in CIF | ![]() | 29.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4c9gSC ![]() 4c9hC ![]() 4c9qC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.99751, -0.06649, -0.02351), Vector: |
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Components
#1: Protein | Mass: 35255.980 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: ![]() ![]() #2: Chemical | #3: Chemical | ChemComp-CDL / |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 46.8 % / Description: NONE |
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Crystal grow | pH: 8.5 Details: 0.1M TRIS PH 8.5, 20MM SODIUM CITRATE, 10% T-BUTANOL, 28% PEG400 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Dec 20, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8726 Å / Relative weight: 1 |
Reflection | Resolution: 3.4→49.34 Å / Num. obs: 9455 / % possible obs: 99.2 % / Observed criterion σ(I): 6 / Redundancy: 3.9 % / Biso Wilson estimate: 52.23 Å2 / Rmerge(I) obs: 0.25 / Net I/σ(I): 5.9 |
Reflection shell | Resolution: 3.4→3.67 Å / Redundancy: 4 % / Rmerge(I) obs: 0.72 / Mean I/σ(I) obs: 2.1 / % possible all: 96.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 4C9G Resolution: 3.397→38.977 Å / SU ML: 0.36 / σ(F): 1.35 / Phase error: 29.23 / Stereochemistry target values: ML Details: RESIDUES 151-155 AND 205-219 OF CHAIN A, AND 152-155 AND 204-219 OF CHAIN B, ARE UNMODELLED OWING TO POOR DENSITY
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.397→38.977 Å
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Refine LS restraints |
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LS refinement shell |
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