- PDB-4b92: Crystal structure of truncated human CRMP-5 soaked with Zn -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4b92
Title
Crystal structure of truncated human CRMP-5 soaked with Zn
Components
DIHYDROPYRIMIDINASE-RELATED PROTEIN 5
Keywords
SIGNALING PROTEIN / NEUROGENESIS / PHOSPHOPROTEIN / CRMP / TIM BARREL / AXONAL OUTGROWTH / DEVELOPMENTAL PROTEIN
Function / homology
Function and homology information
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides / negative regulation of dendrite morphogenesis / CRMPs in Sema3A signaling / axon guidance / nervous system development / neuronal cell body / dendrite / signal transduction / protein-containing complex / cytosol Similarity search - Function
Resolution: 2.9→38.92 Å / Cor.coef. Fo:Fc: 0.933 / Cor.coef. Fo:Fc free: 0.877 / SU B: 16.594 / SU ML: 0.306 / Cross valid method: THROUGHOUT / ESU R Free: 0.428 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25009
1180
5.1 %
RANDOM
Rwork
0.19077
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obs
0.19377
21826
99.63 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK