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- PDB-4axy: A molecular basis for the action of the collagen-specific chapero... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4axy | ||||||
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Title | A molecular basis for the action of the collagen-specific chaperone Hsp47-SERPINH1 and its structure-specific client recognition. | ||||||
![]() | COLLAGEN-LIKE PEPTIDE | ||||||
![]() | STRUCTURAL PROTEIN / CMP | ||||||
Biological species | SYNTHETIC CONSTRUCT (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Widmer, C. / Gebauer, J.M. / Brunstein, E. / Rosenbaum, S. / Zaucke, F. / Droegmueller, C. / Leeb, T. / Baumann, U. | ||||||
![]() | ![]() Title: Molecular Basis for the Action of the Collagen-Specific Chaperone Hsp47/Serpinh1 and its Structure-Specific Client Recognition. Authors: Widmer, C. / Gebauer, J.M. / Brunstein, E. / Rosenbaum, S. / Zaucke, F. / Drogemuller, C. / Leeb, T. / Baumann, U. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 33.4 KB | Display | ![]() |
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PDB format | ![]() | 27.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 418.9 KB | Display | ![]() |
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Full document | ![]() | 418.9 KB | Display | |
Data in XML | ![]() | 5.4 KB | Display | |
Data in CIF | ![]() | 6.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein/peptide | Mass: 1613.817 Da / Num. of mol.: 3 / Source method: obtained synthetically / Source: (synth.) SYNTHETIC CONSTRUCT (others) #2: Water | ChemComp-HOH / | Nonpolymer details | ACETYL GROUP (ACE): THE N-TERMINUS WAS ACETYLATED TO PREVENT CHARGES. AMINO GROUP (NH2): THE C- ...ACETYL GROUP (ACE): THE N-TERMINUS WAS ACETYLATED | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.48 Å3/Da / Density % sol: 16.7 % Description: MR WAS DONE WITH PARTS OF THE STRUCTURE PUBLISHED IN THE SAME ARTICLE AS THIS ENTRY. |
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Crystal grow | pH: 5.75 Details: 3.15 M AMMONIUM SULFATE, 0.05 M CITRIC ACID PH 5.75 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Nov 6, 2011 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.24→100 Å / Num. obs: 10802 / % possible obs: 100 % / Observed criterion σ(I): 3 / Redundancy: 12.6 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 20.6 |
Reflection shell | Resolution: 1.24→1.31 Å / Redundancy: 6.9 % / Rmerge(I) obs: 0.49 / Mean I/σ(I) obs: 3.6 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.24→32.294 Å
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Refine LS restraints |
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LS refinement shell |
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