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Open data
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Basic information
Entry | Database: PDB / ID: 4atg | ||||||
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Title | TAF6 C-terminal domain from Antonospora locustae | ||||||
![]() | TAF6![]() | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() SLIK (SAGA-like) complex / SAGA complex / transcription factor TFIID complex / RNA polymerase II general transcription initiation factor activity / ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Romier, C. | ||||||
![]() | ![]() Title: TFIID Taf6-Taf9 Complex Formation Involves the Heat Repeat-Containing C-Terminal Domain of Taf6 and is Modulated by Taf5 Protein. Authors: Scheer, E. / Delbac, F. / Tora, L. / Moras, D. / Romier, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 97.1 KB | Display | ![]() |
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PDB format | ![]() | 74.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 22634.561 Da / Num. of mol.: 1 / Fragment: C-TERMINAL DOMAIN, RESIDUES 160-355 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() | ||||
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#2: Chemical | ![]() #3: Water | ChemComp-HOH / | ![]() Sequence details | NOT IN DATABASES GLY 160 AND SER 161 THROMBIN CLEAVAGE SITE. HIS 162 AND MET 163 ENGINEERED | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 51 % / Description: NONE |
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Crystal grow![]() | Details: 0.1 M CHES PH 9.5, 10% (W/V) PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Nov 14, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.89→50 Å / Num. obs: 17911 / % possible obs: 99.5 % / Observed criterion σ(I): 2 / Redundancy: 3.7 % / Biso Wilson estimate: 25.09 Å2 / Rmerge(I) obs: 0.05 / Net I/σ(I): 30.6 |
Reflection shell | Resolution: 1.89→1.94 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.34 / Mean I/σ(I) obs: 3.8 / % possible all: 99.6 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: NONE Resolution: 1.89→18.46 Å / Cor.coef. Fo:Fc: 0.956 / Cor.coef. Fo:Fc free: 0.9311 / SU R Cruickshank DPI: 0.131 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.138 / SU Rfree Blow DPI: 0.132 / SU Rfree Cruickshank DPI: 0.129
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Displacement parameters | Biso mean: 30.16 Å2
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Refine analyze | Luzzati coordinate error obs: 0.236 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.89→18.46 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.89→2 Å / Total num. of bins used: 9
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Refinement TLS params. | Method: refined / Origin x: 25.9766 Å / Origin y: 40.0697 Å / Origin z: 15.9232 Å
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Refinement TLS group | Selection details: CHAIN A |