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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 3zkf | ||||||
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タイトル | Structure of LC8 in complex with Nek9 phosphopeptide | ||||||
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![]() | CONTRACTILE PROTEIN/PEPTIDE / CONTRACTILE PROTEIN-PEPTIDE COMPLEX | ||||||
機能・相同性 | ![]() nitric-oxide synthase inhibitor activity / negative regulation of DNA strand resection involved in replication fork processing / intraciliary retrograde transport / motile cilium assembly / Activation of BIM and translocation to mitochondria / Activation of NIMA Kinases NEK9, NEK6, NEK7 / ciliary tip / Intraflagellar transport / Nuclear Pore Complex (NPC) Disassembly / negative regulation of nitric oxide biosynthetic process ...nitric-oxide synthase inhibitor activity / negative regulation of DNA strand resection involved in replication fork processing / intraciliary retrograde transport / motile cilium assembly / Activation of BIM and translocation to mitochondria / Activation of NIMA Kinases NEK9, NEK6, NEK7 / ciliary tip / Intraflagellar transport / Nuclear Pore Complex (NPC) Disassembly / negative regulation of nitric oxide biosynthetic process / dynein complex / negative regulation of phosphorylation / COPI-independent Golgi-to-ER retrograde traffic / cytoplasmic dynein complex / enzyme inhibitor activity / dynein intermediate chain binding / Macroautophagy / protein kinase activator activity / positive regulation of insulin secretion involved in cellular response to glucose stimulus / tertiary granule membrane / ficolin-1-rich granule membrane / spermatid development / Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal / COPI-mediated anterograde transport / Mitotic Prometaphase / EML4 and NUDC in mitotic spindle formation / Loss of Nlp from mitotic centrosomes / Loss of proteins required for interphase microtubule organization from the centrosome / axon cytoplasm / Recruitment of mitotic centrosome proteins and complexes / Recruitment of NuMA to mitotic centrosomes / Resolution of Sister Chromatid Cohesion / Anchoring of the basal body to the plasma membrane / regulation of mitotic cell cycle / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / substantia nigra development / MHC class II antigen presentation / AURKA Activation by TPX2 / RHO GTPases Activate Formins / mitotic spindle / kinetochore / cilium / Aggrephagy / HCMV Early Events / Separation of Sister Chromatids / Regulation of PLK1 Activity at G2/M Transition / site of double-strand break / mitotic cell cycle / scaffold protein binding / microtubule / cytoskeleton / non-specific serine/threonine protein kinase / phosphorylation / cell division / protein serine kinase activity / protein serine/threonine kinase activity / centrosome / apoptotic process / Neutrophil degranulation / protein-containing complex binding / protein kinase binding / enzyme binding / mitochondrion / ATP binding / identical protein binding / membrane / nucleus / metal ion binding / plasma membrane / cytoplasm / cytosol 類似検索 - 分子機能 | ||||||
生物種 | ![]() | ||||||
手法 | ![]() ![]() ![]() | ||||||
![]() | Gallego, P. / Velazquez-Campoy, A. / Regue, L. / Roig, J. / Reverter, D. | ||||||
![]() | ![]() タイトル: Structural Analysis of the Regulation of the Dynll/Lc8 Binding to Nek9 by Phosphorylation 著者: Gallego, P. / Velazquez-Campoy, A. / Regue, L. / Roig, J. / Reverter, D. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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-検証レポート
文書・要旨 | ![]() | 519 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 543.7 KB | 表示 | |
XML形式データ | ![]() | 24.7 KB | 表示 | |
CIF形式データ | ![]() | 33.8 KB | 表示 | |
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-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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単位格子 |
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要素
#1: タンパク質 | 分子量: 10381.899 Da / 分子数: 6 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() #2: タンパク質・ペプチド | 分子量: 1198.243 Da / 分子数: 6 / 由来タイプ: 合成 / 詳細: PHOSPHORYLATION AT SER944 / 由来: (合成) ![]() #3: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 2.38 Å3/Da / 溶媒含有率: 48.28 % / 解説: NONE |
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-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: ![]() ![]() ![]() |
検出器 | タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL |
放射 | プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.979494 Å / 相対比: 1 |
反射 | 解像度: 2.49→47.73 Å / Num. obs: 22982 / % possible obs: 99.2 % / Observed criterion σ(I): 2 / 冗長度: 3.4 % / Biso Wilson estimate: 49.17 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 7.6 |
反射 シェル | 解像度: 2.49→2.63 Å / 冗長度: 3.3 % / Rmerge(I) obs: 1 / Mean I/σ(I) obs: 1.5 / % possible all: 95.6 |
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解析
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精密化 | 構造決定の手法: ![]()
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溶媒の処理 | 減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 60.636 Å2 / ksol: 0.4 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ |
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精密化ステップ | サイクル: LAST / 解像度: 2.6→44.967 Å
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LS精密化 シェル |
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