登録情報 データベース : PDB / ID : 3wsr 構造の表示 ダウンロードとリンクタイトル Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin 要素C-type lectin domain family 1 member B Peptide from Podoplanin 詳細キーワード SUGAR BINDING PROTEIN / C-type lectin fold / Cell surface receptor / Podoplanin / O-glycosylated / Extracellular region機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
regulation of myofibroblast contraction / lymphatic endothelial cell fate commitment / actin-mediated cell contraction / leading edge of lamellipodium / regulation of substrate adhesion-dependent cell spreading / chemokine binding / Specification of primordial germ cells / positive regulation of extracellular matrix disassembly / lymphangiogenesis / regulation of lamellipodium morphogenesis ... regulation of myofibroblast contraction / lymphatic endothelial cell fate commitment / actin-mediated cell contraction / leading edge of lamellipodium / regulation of substrate adhesion-dependent cell spreading / chemokine binding / Specification of primordial germ cells / positive regulation of extracellular matrix disassembly / lymphangiogenesis / regulation of lamellipodium morphogenesis / tetraspanin-enriched microdomain / positive regulation of platelet aggregation / filopodium membrane / wound healing, spreading of cells / anchoring junction / platelet formation / microvillus membrane / lamellipodium membrane / lymph node development / positive regulation of epithelial to mesenchymal transition / Rho protein signal transduction / GPVI-mediated activation cascade / ruffle / lung development / cell projection / filopodium / Heme signaling / defense response / platelet activation / ruffle membrane / cell junction / transmembrane signaling receptor activity / cell migration / lamellipodium / regulation of cell shape / protein-folding chaperone binding / carbohydrate binding / cytoplasmic vesicle / basolateral plasma membrane / cell surface receptor signaling pathway / cell adhesion / positive regulation of cell migration / apical plasma membrane / membrane raft / signaling receptor binding / negative regulation of cell population proliferation / negative regulation of apoptotic process / cell surface / signal transduction / mitochondrion / membrane / plasma membrane / cytosol 類似検索 - 分子機能 : / : / Podoplanin / Natural killer cell receptor-like, C-type lectin-like domain / Mannose-Binding Protein A; Chain A / Mannose-Binding Protein A, subunit A / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) ... : / : / Podoplanin / Natural killer cell receptor-like, C-type lectin-like domain / Mannose-Binding Protein A; Chain A / Mannose-Binding Protein A, subunit A / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) / C-type lectin-like/link domain superfamily / C-type lectin fold / Roll / Alpha Beta 類似検索 - ドメイン・相同性 Podoplanin / C-type lectin domain family 1 member B 類似検索 - 構成要素生物種 Homo sapiens (ヒト)手法 X線回折 / シンクロトロン / 分子置換 / 解像度 : 1.91 Å 詳細データ登録者 Nagae, M. / Morita-Matsumoto, K. / Kato, M. / Kato-Kaneko, M. / Kato, Y. / Yamaguchi, Y. 引用ジャーナル : Structure / 年 : 2014タイトル : A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin著者 : Nagae, M. / Morita-Matsumoto, K. / Kato, M. / Kato-Kaneko, M. / Kato, Y. / Yamaguchi, Y. 履歴 登録 2014年3月20日 登録サイト : PDBJ / 処理サイト : PDBJ改定 1.0 2014年10月22日 Provider : repository / タイプ : Initial release改定 1.1 2014年12月24日 Group : Database references改定 1.2 2017年11月22日 Group : Refinement description / カテゴリ : software / Item : _software.name改定 2.0 2020年7月29日 Group : Atomic model / Data collection ... Atomic model / Data collection / Database references / Derived calculations / Structure summary カテゴリ : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / struct_asym / struct_conn / struct_ref_seq_dif / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details 解説 : Carbohydrate remediation / Provider : repository / タイプ : Remediation改定 2.1 2023年11月8日 Group : Data collection / Database references ... Data collection / Database references / Refinement description / Structure summary カテゴリ : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession改定 2.2 2024年11月20日 Group : Structure summaryカテゴリ : pdbx_entry_details / pdbx_modification_feature
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