- PDB-3wev: Crystal structure of the Schiff base intermediate of L-Lys epsilo... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 3wev
Title
Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys
Components
L-lysine 6-oxidase
Keywords
OXIDOREDUCTASE / amino acid oxidase / arm / beta barrel / three be-ta sheets / amine oxidase / L-Lys binding
Function / homology
Function and homology information
L-lysine 6-oxidase / L-lysine 6-oxidase activity / negative regulation of single-species biofilm formation / quinone binding / killing of cells of another organism / defense response to bacterium / extracellular region Similarity search - Function
Resolution: 1.98→46.86 Å / Cor.coef. Fo:Fc: 0.963 / Cor.coef. Fo:Fc free: 0.945 / SU B: 2.75 / SU ML: 0.079 / Cross valid method: THROUGHOUT / ESU R: 0.136 / ESU R Free: 0.128 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.18914
5745
5 %
RANDOM
Rwork
0.14991
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obs
0.15187
109343
98.6 %
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all
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115096
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK