登録情報 | データベース: PDB / ID: 3vys |
---|
タイトル | Crystal structure of the HypC-HypD-HypE complex (form I) |
---|
要素 | (Hydrogenase expression/formation protein ...) x 3 |
---|
キーワード | METAL BINDING PROTEIN/TRANSFERASE / [NiFe] hydrogenase maturation / METAL BINDING PROTEIN-TRANSFERASE complex |
---|
機能・相同性 | 機能・相同性情報
carbon dioxide binding / carbon monoxide binding / protein maturation / 4 iron, 4 sulfur cluster binding / iron ion binding / ATP binding / metal ion binding類似検索 - 分子機能 HypD, alpha/beta domain 2 / HypD, alpha/beta domain 1 / Arc Repressor Mutant, subunit A - #100 / Hydrogenase formation HypD protein / HypD, domain 1 / HypD, domain 2 / Hydrogenase formation hypA family / Hydrogenase assembly chaperone, conserved site / Hydrogenases expression/synthesis hupF/hypC family signature. / Hydrogenase expression/formation protein, HupF/HypC ...HypD, alpha/beta domain 2 / HypD, alpha/beta domain 1 / Arc Repressor Mutant, subunit A - #100 / Hydrogenase formation HypD protein / HypD, domain 1 / HypD, domain 2 / Hydrogenase formation hypA family / Hydrogenase assembly chaperone, conserved site / Hydrogenases expression/synthesis hupF/hypC family signature. / Hydrogenase expression/formation protein, HupF/HypC / HupF/HypC family / Carbamoyl dehydratase HypE / Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 / PurM-like C-terminal domain / PurM-like, N-terminal domain / PurM-like, N-terminal domain / AIR synthase related protein, N-terminal domain / Arc Repressor Mutant, subunit A / PurM-like, C-terminal domain / PurM-like, C-terminal domain superfamily / PurM-like, N-terminal domain superfamily / AIR synthase related protein, C-terminal domain / SH3 type barrels. - #140 / 60s Ribosomal Protein L30; Chain: A; / Helix non-globular / Special / SH3 type barrels. / Roll / Alpha-Beta Complex / Rossmann fold / 2-Layer Sandwich / 3-Layer(aba) Sandwich / Mainly Beta / Alpha Beta類似検索 - ドメイン・相同性 IRON/SULFUR CLUSTER / Hydrogenase expression/formation protein HypC / hydrogenase expression/formation protein HypD / Hydrogenase expression/formation protein HypE類似検索 - 構成要素 |
---|
生物種 | ![](img/tx_archaea.gif) Thermococcus kodakarensis (古細菌) |
---|
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.35 Å |
---|
データ登録者 | Watanabe, S. / Miki, K. |
---|
引用 | ジャーナル: Structure / 年: 2012 タイトル: Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation 著者: Watanabe, S. / Matsumi, R. / Atomi, H. / Imanaka, T. / Miki, K. |
---|
履歴 | 登録 | 2012年10月2日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
---|
改定 1.0 | 2012年11月28日 | Provider: repository / タイプ: Initial release |
---|
改定 1.1 | 2013年7月31日 | Group: Database references |
---|
改定 1.2 | 2023年11月8日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_comp_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr2_label_atom_id / _pdbx_struct_conn_angle.ptnr2_label_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
---|
|
---|