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- PDB-3vuq: Crystal structure of TTHA0167, a transcriptional regulator, TetR/... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3vuq | ||||||
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Title | Crystal structure of TTHA0167, a transcriptional regulator, TetR/AcrR family from Thermus thermophilus HB8 | ||||||
![]() | Transcriptional regulator (TetR/AcrR family) | ||||||
![]() | TRANSCRIPTION REGULATOR / helix-turn-helix / transcriptional regulator / DNA Binding | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Agari, Y. / Sakamoto, K. / Agari, K. / Kuramitsu, S. / Shinkai, A. | ||||||
![]() | ![]() Title: Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8 Authors: Agari, Y. / Sakamoto, K. / Yutani, K. / Kuramitsu, S. / Shinkai, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 150.9 KB | Display | ![]() |
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PDB format | ![]() | 126.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 446.1 KB | Display | ![]() |
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Full document | ![]() | 459.5 KB | Display | |
Data in XML | ![]() | 29.7 KB | Display | |
Data in CIF | ![]() | 42.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21371.908 Da / Num. of mol.: 4 / Fragment: UNP residues 3-189 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal |
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Crystal grow |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Jul 6, 2009 Details: a fixed exit Si double crystal monochromator followed by a two dimensional focusing mirror |
Radiation | Monochromator: fixed exit Si double crystal / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.04→50 Å / Num. obs: 53147 / % possible obs: 98.2 % / Redundancy: 4.2 % / Biso Wilson estimate: 14 Å2 / Rmerge(I) obs: 0.046 / Net I/σ(I): 29.1 |
Reflection shell | Resolution: 2.04→2.09 Å / Redundancy: 4.1 % / Rmerge(I) obs: 0.266 / Mean I/σ(I) obs: 5.77 / Num. unique all: 3090 / % possible all: 79.1 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 66.6429 Å2 / ksol: 0.42 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.2 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.05→30.32 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.05→2.17 Å / Rfactor Rfree error: 0.01 / Total num. of bins used: 6
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Xplor file |
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