- PDB-3vpd: LysX from Thermus thermophilus complexed with AMP-PNP -
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データを開く
IDまたはキーワード:
読み込み中...
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基本情報
登録情報
データベース: PDB / ID: 3vpd
タイトル
LysX from Thermus thermophilus complexed with AMP-PNP
要素
Ribosomal protein S6 modification protein
キーワード
LIGASE / ATP-dependenet amine/thiol ligase family / ATP-dependenet amine/thiol ligase
機能・相同性
機能・相同性情報
[amino-group carrier protein]-L-2-aminoadipate ligase / N-acetyl-L-aspartate-L-glutamate ligase activity / ribosomal S6-glutamic acid ligase activity / lysine biosynthetic process / lysine biosynthetic process via aminoadipic acid / protein modification process => GO:0036211 / SOS response / catalytic activity / protein modification process / ATP binding ...[amino-group carrier protein]-L-2-aminoadipate ligase / N-acetyl-L-aspartate-L-glutamate ligase activity / ribosomal S6-glutamic acid ligase activity / lysine biosynthetic process / lysine biosynthetic process via aminoadipic acid / protein modification process => GO:0036211 / SOS response / catalytic activity / protein modification process / ATP binding / metal ion binding / cytoplasm 類似検索 - 分子機能
解像度: 1.95→49.86 Å / Cor.coef. Fo:Fc: 0.955 / Cor.coef. Fo:Fc free: 0.932 / SU B: 3.39 / SU ML: 0.098 / 交差検証法: THROUGHOUT / ESU R: 0.148 / ESU R Free: 0.143 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.23777
2800
5.1 %
RANDOM
Rwork
0.19639
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obs
0.19845
52342
99.72 %
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all
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55332
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK